View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_27 (Length: 367)

Name: NF19898_low_27
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_27
NF19898_low_27
[»] chr3 (2 HSPs)
chr3 (151-350)||(41930152-41930350)
chr3 (102-150)||(11033881-11033929)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-350)||(209474-209690)
[»] scaffold0077 (2 HSPs)
scaffold0077 (147-289)||(50166-50308)
scaffold0077 (147-289)||(59919-60061)
[»] chr5 (6 HSPs)
chr5 (14-150)||(32723796-32723932)
chr5 (104-150)||(35332611-35332657)
chr5 (103-156)||(42880084-42880137)
chr5 (111-150)||(19832217-19832256)
chr5 (104-150)||(38928634-38928680)
chr5 (102-150)||(41612841-41612889)
[»] chr1 (5 HSPs)
chr1 (14-150)||(15718775-15718911)
chr1 (87-149)||(2251008-2251069)
chr1 (103-145)||(42955771-42955813)
chr1 (104-150)||(15847411-15847457)
chr1 (104-153)||(18509613-18509662)
[»] chr8 (5 HSPs)
chr8 (104-150)||(44970841-44970887)
chr8 (85-150)||(22928112-22928177)
chr8 (111-150)||(29642452-29642491)
chr8 (103-158)||(8226739-8226794)
chr8 (111-158)||(22648596-22648644)
[»] chr6 (6 HSPs)
chr6 (111-157)||(17097527-17097573)
chr6 (111-150)||(21686117-21686156)
chr6 (104-150)||(20014729-20014775)
chr6 (104-150)||(23097046-23097092)
chr6 (102-150)||(7367878-7367926)
chr6 (104-144)||(14606004-14606044)
[»] scaffold0214 (2 HSPs)
scaffold0214 (86-155)||(11555-11624)
scaffold0214 (86-155)||(25855-25924)
[»] scaffold0155 (1 HSPs)
scaffold0155 (85-150)||(36838-36903)
[»] scaffold0022 (1 HSPs)
scaffold0022 (84-154)||(152899-152968)
[»] chr7 (5 HSPs)
chr7 (104-150)||(1725865-1725911)
chr7 (102-150)||(45623324-45623372)
chr7 (104-150)||(3571691-3571737)
chr7 (84-150)||(39700513-39700578)
chr7 (102-154)||(26643038-26643091)
[»] chr4 (6 HSPs)
chr4 (104-150)||(13759596-13759642)
chr4 (84-150)||(43591267-43591332)
chr4 (85-150)||(31419318-31419383)
chr4 (111-150)||(51036043-51036082)
chr4 (102-150)||(581438-581486)
chr4 (104-147)||(51860819-51860863)
[»] scaffold0164 (2 HSPs)
scaffold0164 (111-150)||(33874-33913)
scaffold0164 (86-150)||(34291-34355)
[»] scaffold0125 (1 HSPs)
scaffold0125 (86-157)||(33420-33491)
[»] scaffold0061 (2 HSPs)
scaffold0061 (83-150)||(1624-1691)
scaffold0061 (83-150)||(7135-7202)
[»] chr2 (1 HSPs)
chr2 (111-159)||(44923882-44923930)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 350
Target Start/End: Complemental strand, 41930350 - 41930152
Alignment:
Q  151 aatatatagtgattctctttggtagtgtttctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcggtttctattgcta 250  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41930350 aatatatagtgattctctttggtagtgtgtctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcg-tttctattgcta 41930252  T
Q  251 tttatatggttattggagttgaaacttaaaagatatgtgataaattgcaagatataagaccaacttgtatataaggttaaaccaaaccaaaccaagatat 350  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41930251 tttatatggttattggagttgaaacttaaaagatctgtgataaattgcaagatataagaccaacttgtatataaggttaaaccaaaccaaaccaagatat 41930152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 11033881 - 11033929
Alignment:
Q  102 agaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||| ||||||| |||| || ||||||||||||||||||| ||||    
T  11033881 agaaaataggctacactaaaaccaagtattgcctttattaatagttata 11033929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 151 - 350
Target Start/End: Original strand, 209474 - 209690
Alignment:
Q  151 aatatatagtgattctctttggtagtgtttctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcggtttctattgcta 250  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  209474 aatatatagtgattctctttggtagtgtctctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcggtttctattgcta 209573  T
Q  251 tttatatggttattggagttgaaacttaaaag-----------------atatgtgataaattgcaagatataagaccaacttgtatataaggttaaacc 333  Q
    ||||||||||||||||||||||||||| ||||                 | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  209574 tttatatggttattggagttgaaacttgaaaggttgttcaacgaataaaagatgtgataaattgcaagatataagaccaacttgtatacaaggttaaacc 209673  T
Q  334 aaaccaaaccaagatat 350  Q
    |||||||||||||||||    
T  209674 aaaccaaaccaagatat 209690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 50166 - 50308
Alignment:
Q  147 tataaatatatagtgattctctttggtagtgtttctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcggtttctatt 246  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50166 tatatatatatagtgattctctttggtagtgtctctagtaattataattgaatttacactctttctttaatgcacatatgtactattgtcggtttctatt 50265  T
Q  247 gctatttatatggttattggagttgaaacttaaaagatatgtg 289  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  50266 gctatttatatggttgttggagttgaaacttaaaagatctgtg 50308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 59919 - 60061
Alignment:
Q  147 tataaatatatagtgattctctttggtagtgtttctagtaattataattgaatttacactctttctttaatgcacatatgtattattgtcggtttctatt 246  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  59919 tatatatatatagtgattctctttggtagtgtctctagtaattataattgaatttacactctttctttaatgcacatatgtactattgtcggtttctatt 60018  T
Q  247 gctatttatatggttattggagttgaaacttaaaagatatgtg 289  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  60019 gctatttatatggttgttggagttgaaacttaaaagatctgtg 60061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 32723932 - 32723796
Alignment:
Q  14 ttctaagtagttattgcaaacgtaaattactaaattatacattcaattacttcttaaagttgaagaaattgaagggtaatttgggaatagaaaatatgct 113  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32723932 ttctaagtagttattgcaaacgtaaattattaaattatacaatcagttacttcttaaagttgaagaaattgaagggtaatttggaaatagaaaatatgct 32723833  T
Q  114 acaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  32723832 acaccaaaagcatgtattgtctttattaataggtata 32723796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 35332611 - 35332657
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  35332611 aaaataggctacactaaaagcatgtattgcctttattaataggtata 35332657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 42880137 - 42880084
Alignment:
Q  103 gaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaatata 156  Q
    ||||||| |||||||||||   |||||||||||||||||||||||||| |||||    
T  42880137 gaaaataggctacaccaaagcaatgtattgcctttattaataggtatagatata 42880084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 19832256 - 19832217
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  19832256 gctacaccaaaaaaaagtattgcctttattaataggtata 19832217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 38928634 - 38928680
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| |||||||||||||||||| || ||||||||||||| ||||    
T  38928634 aaaataggctacaccaaaaacatgttttccctttattaatagttata 38928680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 41612889 - 41612841
Alignment:
Q  102 agaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||| |||||||||||   | ||||||||||||||||||||||||    
T  41612889 agaaaataggctacaccaaaccaaagtattgcctttattaataggtata 41612841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 15718911 - 15718775
Alignment:
Q  14 ttctaagtagttattgcaaacgtaaattactaaattatacattcaattacttcttaaagttgaagaaattgaagggtaatttgggaatagaaaatatgct 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15718911 ttctaagtagttattgcaaacgtaaattactaaattatgcattcagttactttttaaaattgaagaaattgaagggtaatttgggaatagaaaatatgct 15718812  T
Q  114 acaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||   ||||||||||||||||||||||||||    
T  15718811 acaccaaagtaatgtattgcctttattaataggtata 15718775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 2251008 - 2251069
Alignment:
Q  87 gggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtat 149  Q
    |||||| |||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  2251008 gggtaaattgggaatggaaaataggctacaccaaaaa-atgtattacctttattaataggtat 2251069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 42955813 - 42955771
Alignment:
Q  103 gaaaatatgctacaccaaaaacatgtattgcctttattaatag 145  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  42955813 gaaaataagctacaccaaaaagatgtattgcctttattaatag 42955771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 15847411 - 15847457
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||||    
T  15847411 aaaataggctacaccaaatccatgttttgcctttattaataggtata 15847457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 18509613 - 18509662
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtataaat 153  Q
    |||||| |||||||||||   |||| ||||||||||||||||||||||||    
T  18509613 aaaataggctacaccaaatctatgttttgcctttattaataggtataaat 18509662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 44970841 - 44970887
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  44970841 aaaataggctacaccaaaagcatgtattgcctttattaataggtata 44970887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 22928177 - 22928112
Alignment:
Q  85 aagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||| ||||| ||||| | ||||||||||| |||||| ||| |||||||||||||||||    
T  22928177 aagggtaattttggaatggaaaaaaggctacaccaaacacatgttttgtctttattaataggtata 22928112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 29642452 - 29642491
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29642452 gctacaccaaaaacatgtattgtctttattaataggtata 29642491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 8226739 - 8226794
Alignment:
Q  103 gaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaatatata 158  Q
    ||||||| |||||| ||||   |||||||||||||||||||||||||| |||||||    
T  8226739 gaaaataggctacatcaaagcaatgtattgcctttattaataggtatatatatata 8226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 22648596 - 22648644
Alignment:
Q  111 gctacaccaaaa-acatgtattgcctttattaataggtataaatatata 158  Q
    |||||||||||| | | |||||||||||||||||||||||| |||||||    
T  22648596 gctacaccaaaataaaagtattgcctttattaataggtatatatatata 22648644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 17097573 - 17097527
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtataaatatat 157  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  17097573 gctacaccgaaaacatgtattgcctttattaataggtatagatatat 17097527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 21686117 - 21686156
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  21686117 gctacaccaaaaaaaagtattgcctttattaataggtata 21686156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 20014775 - 20014729
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| ||||||||||| | | ||||||||||||||||||||||||    
T  20014775 aaaataggctacaccaaacaaaagtattgcctttattaataggtata 20014729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 23097046 - 23097092
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| |||||||||||| || ||||||||||||||||||| ||||    
T  23097046 aaaataggctacaccaaaatcaagtattgcctttattaatagttata 23097092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 7367926 - 7367878
Alignment:
Q  102 agaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||| |||||| |||||  | ||||||||||||||||||||||||    
T  7367926 agaaaataggctacaacaaaagaaagtattgcctttattaataggtata 7367878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 14606044 - 14606004
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaata 144  Q
    |||||| |||||| ||||| |||||||||||||||||||||    
T  14606044 aaaataggctacagcaaaagcatgtattgcctttattaata 14606004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 11555 - 11624
Alignment:
Q  86 agggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaatat 155  Q
    |||||| ||| |||||  |||||| |||||||||||| || |||||||||||||||||||||||| ||||    
T  11555 agggtatttttggaatctaaaataggctacaccaaaaccaagtattgcctttattaataggtatagatat 11624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 25855 - 25924
Alignment:
Q  86 agggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaatat 155  Q
    |||||| ||| |||||  |||||| |||||||||||| || |||||||||||||||||||||||| ||||    
T  25855 agggtatttttggaatctaaaataggctacaccaaaaccaagtattgcctttattaataggtatagatat 25924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 36903 - 36838
Alignment:
Q  85 aagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||| ||||| ||||| | |||||||||||  ||||| |||||||||||||||||||||    
T  36903 aagggtaattttggaatggaaaaaaagctacaccaaactcatgttttgcctttattaataggtata 36838  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 152899 - 152968
Alignment:
Q  84 gaagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaata 154  Q
    |||||||||||| |||| |||||||| ||||||| ||| | |||| |||||||||||||||||||| ||||    
T  152899 gaagggtaatttaggaa-agaaaataggctacacgaaacaaatgttttgcctttattaataggtattaata 152968  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 1725865 - 1725911
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||    
T  1725865 aaaataggctacaccaaatagatgtattgcctttattaataggtata 1725911  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 45623372 - 45623324
Alignment:
Q  102 agaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  45623372 agaaaataggctacaccaaaagaaagtattgcctttattaataggtata 45623324  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 3571691 - 3571737
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| |||||||||||||||||| || ||||||||||||| ||||    
T  3571691 aaaataggctacaccaaaaacatgttttccctttattaatagttata 3571737  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 39700578 - 39700513
Alignment:
Q  84 gaagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||||||| |||| |||||||| ||||||||||| | | || || ||||||||||||||||||    
T  39700578 gaagggtaatttaggaa-agaaaataggctacaccaaacaaaagttttacctttattaataggtata 39700513  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 26643091 - 26643038
Alignment:
Q  102 agaaaatatgctacaccaaaa-acatgtattgcctttattaataggtataaata 154  Q
    |||||||| |||||||||||| | | ||||||||||||||||||||||| ||||    
T  26643091 agaaaataggctacaccaaaagaaaagtattgcctttattaataggtattaata 26643038  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 13759596 - 13759642
Alignment:
Q  104 aaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||    
T  13759596 aaaataggctacaccaaatagatgtattgcctttattaataggtata 13759642  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 43591332 - 43591267
Alignment:
Q  84 gaagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||||||| |||||||| ||||||||||| | | || || ||||||||||||||||||    
T  43591332 gaagggtaatttgggaa-agaaaataggctacaccaaacaaaagttttccctttattaataggtata 43591267  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 31419383 - 31419318
Alignment:
Q  85 aagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||| |||||||||||| ||||| | |||||| ||||  ||||| |||||||||||||||||||||    
T  31419383 aaggataatttgggaatggaaaaaaggctacatcaaactcatgttttgcctttattaataggtata 31419318  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 51036043 - 51036082
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  51036043 gctacaccaaaaataggtattgcctttattaataggtata 51036082  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 581486 - 581438
Alignment:
Q  102 agaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||| |||||||||||   | ||||||||||||||||||||||||    
T  581486 agaaaataggctacaccaaactaaagtattgcctttattaataggtata 581438  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 51860863 - 51860819
Alignment:
Q  104 aaaatatgctacaccaaa-aacatgtattgcctttattaataggt 147  Q
    |||||| ||||||||||| || |||||||||||||||||||||||    
T  51860863 aaaataagctacaccaaacaaaatgtattgcctttattaataggt 51860819  T

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Target: scaffold0164 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 33874 - 33913
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  33874 gctacaccaaaagcaagtattgcctttattaataggtata 33913  T

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Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 34355 - 34291
Alignment:
Q  86 agggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    |||||||||| |||||  |||| | |||||||||||||   ||||| ||||||||||||||||||    
T  34355 agggtaattttggaattaaaaaaaggctacaccaaaaaatagtattccctttattaataggtata 34291  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 33420 - 33491
Alignment:
Q  86 agggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtataaatatat 157  Q
    |||||| ||| |||||  |||||| |||||||||||| || ||||||| |||||||||||||| | ||||||    
T  33420 agggtatttttggaatctaaaataggctacaccaaaaccaagtattgcttttattaataggtaaagatatat 33491  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 1624 - 1691
Alignment:
Q  83 tgaagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||| || | | |||||| ||||||||||||   ||| |||||||||||||||||||||    
T  1624 tgaagggtaatttaggtaaaaaaaataggctacaccaaaagtgtgttttgcctttattaataggtata 1691  T

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Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 7135 - 7202
Alignment:
Q  83 tgaagggtaatttgggaatagaaaatatgctacaccaaaaacatgtattgcctttattaataggtata 150  Q
    ||||||||||||| || | | |||||| ||||||||||||   ||| |||||||||||||||||||||    
T  7135 tgaagggtaatttaggtaaaaaaaataggctacaccaaaagtgtgttttgcctttattaataggtata 7202  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 44923882 - 44923930
Alignment:
Q  111 gctacaccaaaaacatgtattgcctttattaataggtataaatatatag 159  Q
    |||||||||||||   |||||||||||||||||||||||| || |||||    
T  44923882 gctacaccaaaaaatagtattgcctttattaataggtatagatttatag 44923930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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