View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_29 (Length: 366)
Name: NF19898_low_29
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 40986755 - 40987110
Alignment:
| Q |
1 |
acgacatggggtggaggctgcaagcaagagccttccctgcatccaactctatctatgttcatagatatttatgaacgctgataacaatttattnnnnnnn |
100 |
Q |
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| T |
40986755 |
acgacatggggtggaggctgcaagcaagagccttccctgcatccaactctatctatgttcatatatatttatgaacgctaataacaatttattaaaaaaa |
40986854 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnnngtctaattcagttcaaatgatacaaaactaattcgtattaagaacaaattcagtaaacatgacttgaatgaaaatcataaaa |
200 |
Q |
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| T |
40986855 |
taaataaaaattcaaaaagtctaattcagttcaaatgatacaaaactaattcgtattaagaagaaattcagtaaacatgacttgaatgaaaatcataaaa |
40986954 |
T |
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| Q |
201 |
tctgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaatgggggttatgagacatatgatatctgattgatcaatta |
300 |
Q |
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| T |
40986955 |
tctgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaat-ggggttatgagacatatgatatctgattggtcaatta |
40987053 |
T |
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| Q |
301 |
ttattatttttattggtcttttctctaaactcaatttaggtatactttcattcatct |
357 |
Q |
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| T |
40987054 |
ttattatttttattggtcttttctctaaactcaatttaggtatactttcattcatct |
40987110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 40992655 - 40992788
Alignment:
| Q |
164 |
aaattcagtaaacatgacttgaatgaaaatcataaaatctgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaatg |
263 |
Q |
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| T |
40992655 |
aaattcagtaaacatgacttgaatgaaaatcataaaatttgtctggagtgtctagttgtcattaatatagaagtcattgagattgatgtctttgtcaa-- |
40992752 |
T |
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| Q |
264 |
ggggttatgagacatatgatatctgattgatcaatt |
299 |
Q |
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| T |
40992753 |
ggggttatgagacatgagatatctgattgatgaatt |
40992788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 40992811 - 40992855
Alignment:
| Q |
298 |
ttattattattttta-ttggtcttttctctaaactcaatttaggt |
341 |
Q |
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| T |
40992811 |
ttattattatttttaattggtcttttctctaaactcaatttaggt |
40992855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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