View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_31 (Length: 353)

Name: NF19898_low_31
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_31
NF19898_low_31
[»] chr7 (42 HSPs)
chr7 (20-165)||(42796599-42796744)
chr7 (163-288)||(43027134-43027258)
chr7 (20-165)||(36744962-36745107)
chr7 (29-150)||(33860263-33860384)
chr7 (29-150)||(34146193-34146314)
chr7 (29-150)||(34181121-34181242)
chr7 (163-277)||(42796431-42796562)
chr7 (64-150)||(43027310-43027400)
chr7 (163-277)||(45585203-45585319)
chr7 (76-147)||(35084491-35084562)
chr7 (76-147)||(35099792-35099863)
chr7 (78-148)||(35083521-35083591)
chr7 (76-147)||(35073440-35073511)
chr7 (215-277)||(35084701-35084763)
chr7 (272-332)||(42796300-42796360)
chr7 (215-277)||(35073650-35073712)
chr7 (215-277)||(35100002-35100064)
chr7 (163-218)||(33860156-33860211)
chr7 (163-218)||(34146086-34146141)
chr7 (163-218)||(34181294-34181349)
chr7 (163-218)||(35083660-35083715)
chr7 (11-61)||(43027586-43027636)
chr7 (272-333)||(35073783-35073844)
chr7 (272-333)||(35083859-35083920)
chr7 (272-333)||(35100135-35100196)
chr7 (163-218)||(35073581-35073636)
chr7 (163-218)||(35084632-35084687)
chr7 (163-218)||(35099933-35099988)
chr7 (66-149)||(38150099-38150182)
chr7 (66-145)||(38157837-38157916)
chr7 (227-277)||(36745225-36745275)
chr7 (272-325)||(35084834-35084887)
chr7 (215-277)||(35083729-35083788)
chr7 (163-218)||(36745144-36745199)
chr7 (65-144)||(38166734-38166813)
chr7 (272-322)||(36745349-36745399)
chr7 (272-332)||(34145879-34145939)
chr7 (272-332)||(34181496-34181556)
chr7 (92-143)||(37883446-37883497)
chr7 (272-306)||(45585390-45585424)
chr7 (280-332)||(33862238-33862290)
chr7 (280-332)||(34179089-34179141)
[»] scaffold0176 (2 HSPs)
scaffold0176 (29-150)||(23666-23787)
scaffold0176 (163-218)||(23839-23894)
[»] chr6 (14 HSPs)
chr6 (29-150)||(25563224-25563345)
chr6 (29-150)||(25568839-25568960)
chr6 (29-150)||(26102736-26102857)
chr6 (29-150)||(26002707-26002828)
chr6 (163-218)||(25568732-25568787)
chr6 (163-218)||(26002600-26002655)
chr6 (272-332)||(25568525-25568585)
chr6 (91-150)||(4164355-4164414)
chr6 (91-150)||(4225976-4226035)
chr6 (163-218)||(25563117-25563172)
chr6 (163-218)||(26102629-26102684)
chr6 (272-306)||(25562934-25562968)
chr6 (272-306)||(26002419-26002453)
chr6 (272-306)||(26102446-26102480)
[»] chr5 (3 HSPs)
chr5 (163-218)||(9663535-9663590)
chr5 (215-277)||(9663462-9663521)
chr5 (272-325)||(9663338-9663391)
[»] chr2 (2 HSPs)
chr2 (71-144)||(12409841-12409914)
chr2 (71-144)||(12421901-12421974)
[»] chr3 (1 HSPs)
chr3 (101-133)||(2223799-2223831)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 42796744 - 42796599
Alignment:
Q  20 ataaaagagtaaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaat 119  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42796744 ataagagagtaaggggaaatttgtatggcggaatagaatcaatagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaat 42796645  T
Q  120 tcctttggagatcaatctatcaatggcatcctcgtgttcattgcct 165  Q
    |||||||||||||||||||||||||||||||   ||||||||||||    
T  42796644 tcctttggagatcaatctatcaatggcatccctatgttcattgcct 42796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 43027258 - 43027134
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43027258 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaa-gtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatg 43027160  T
Q  263 gtatgaagatcaaagcaaacttggaa 288  Q
    ||||||||||||||| ||||||||||    
T  43027159 gtatgaagatcaaagtaaacttggaa 43027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 36744962 - 36745107
Alignment:
Q  20 ataaaagagtaaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaat 119  Q
    |||| |||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  36744962 ataagagagtaagggaaaatttgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcacccttagcaat 36745061  T
Q  120 tcctttggagatcaatctatcaatggcatcctcgtgttcattgcct 165  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  36745062 tcctttggagatcaatctatcaatggcatccctgtgttcattgcct 36745107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 33860384 - 33860263
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| ||||||||||||| ||||||||  | |||||||| |||||||||| || |||||||||| |||||||| | ||||||||||||||||||||||    
T  33860384 taagggaaaatttgtatggcaaaatagaaatagtagtatcagttgtttcagaagagaagagaagttgaatatgttcggcacccttagcaattcctttgga 33860285  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    |||||||||||||||| |||||    
T  33860284 gatcaatctatcaatgacatcc 33860263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 34146314 - 34146193
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| ||||||||||||| ||||||||  | |||||||| |||||||| | || |||||||||| |||||||| | ||||||||||||||||||||||    
T  34146314 taagggaaaatttgtatggcaaaatagaaatagtagtatcagttgtttcaaaagagaagagaagttgaatatgttcggcacccttagcaattcctttgga 34146215  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    |||||||||||||||| |||||    
T  34146214 gatcaatctatcaatgacatcc 34146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 34181121 - 34181242
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| ||||||||||||| ||||||||  | |||||||| |||||||| | || |||||||||| |||||||| | ||||||||||||||||||||||    
T  34181121 taagggaaaatttgtatggcaaaatagaaatagtagtatcagttgtttcaaaagagaagagaagttgaatatgttcggcacccttagcaattcctttgga 34181220  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    |||||||||||||||| |||||    
T  34181221 gatcaatctatcaatgacatcc 34181242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 42796562 - 42796431
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg-----------------gaagtgtgtttggtaggtcttgaattg 245  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||                 ||||||||||||||| |||||||||||    
T  42796562 cctttataatggagcataaattgatccaatcttgtggcaaattgagattgaaagtgaaatctttgaaagagtggaagtgtgtttggtaagtcttgaattg 42796463  T
Q  246 tgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||||||||||||||||||||||||||||    
T  42796462 tgttatagtcaaacatggtatgaagatcaaag 42796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 43027400 - 43027310
Alignment:
Q  64 gtatcatttgtttcagatgacaagagaagttcaatatgtttgacaccctt----agcaattcctttggagatcaatctatcaatggcatcc 150  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||    |||||||||||||||||||||||||||||||||||||    
T  43027400 gtatcatttgtttcagatgacaagagaagttcaattcgtttgacccccttagcaagcaattcctttggagatcaatctatcaatggcatcc 43027310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 45585203 - 45585319
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaag--tggaagtgtgtttggtaggtcttgaattgtgttatagtcaaaca 260  Q
    |||||| | ||||||||||||||||| |||| ||||||||||| ||||||||||  ||||||  | ||||||| ||||||||||||||||||||||||||    
T  45585203 cctttacagtggagcataaattgatccaatcttgtggcaaattcagattgaaagagtggaaggctttttggtaagtcttgaattgtgttatagtcaaaca 45585302  T
Q  261 tggtatgaagatcaaag 277  Q
    |||||||  ||||||||    
T  45585303 tggtatggtgatcaaag 45585319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 35084491 - 35084562
Alignment:
Q  76 tcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggca 147  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  35084491 tcagatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctattaatggca 35084562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 35099792 - 35099863
Alignment:
Q  76 tcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggca 147  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  35099792 tcagatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctattaatggca 35099863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 35083521 - 35083591
Alignment:
Q  78 agatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggcat 148  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35083521 agatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctattaatggcat 35083591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 35073440 - 35073511
Alignment:
Q  76 tcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggca 147  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  35073440 tcagatgacaagagaagttcaattcgtttgacacccttagcaattcgtttggagatcaatctattaatggca 35073511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 35084701 - 35084763
Alignment:
Q  215 agtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35084701 agtggaaggatgtttggtaagtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 35084763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 42796360 - 42796300
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  42796360 tcaaaccaaacttggaaaagatataagatataatacaatcaggcaactcactctcgagctt 42796300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 35073650 - 35073712
Alignment:
Q  215 agtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||||  ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  35073650 agtggaaggatgtttggtaagtcttgagttgtgttatagtcaaacatggtatgaagatcaaag 35073712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 35100002 - 35100064
Alignment:
Q  215 agtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  35100002 agtggaaggatgtttggtaagtcttgaagtgtgttatagtcaaacatggtatgaagatcaaag 35100064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 33860211 - 33860156
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  33860211 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 33860156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 34146141 - 34146086
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  34146141 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 34146086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 34181294 - 34181349
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  34181294 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 34181349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35083660 - 35083715
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  35083660 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 35083715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 43027636 - 43027586
Alignment:
Q  11 cataggcaaataaaagagtaaggggaaatttgtatggcgaaatagaatcac 61  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43027636 catagtcagataaaagagtaaggggaaatttgtatggcgaaatagaatcac 43027586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 35073783 - 35073844
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagcttc 333  Q
    ||||||| ||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  35073783 tcaaagctaacttggaaaatatataagatataatagaatcaggcaactcactctcgagcttc 35073844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 35083859 - 35083920
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagcttc 333  Q
    ||||||| ||||||||||||||||||||||||| || |||| | ||||||||||||||||||    
T  35083859 tcaaagctaacttggaaaagatataagatataacactatcaggcaactcactctcgagcttc 35083920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 35100135 - 35100196
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagcttc 333  Q
    ||||||| ||||||||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  35100135 tcaaagctaacttggaaaagatataagatataatagaatcaggcaactcactcttgagcttc 35100196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35073581 - 35073636
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||    
T  35073581 cctttataatggagcataaattgatccaatcttgtggtaaattcagattgaaagtg 35073636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35084632 - 35084687
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||    
T  35084632 cctttataatggagcataaattgatccaatcttgtggtaaattcagattgaaagtg 35084687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35099933 - 35099988
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||    
T  35099933 cctttataatggagcataaattgatccaatcttgtggtaaattcagattgaaagtg 35099988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 38150099 - 38150182
Alignment:
Q  66 atcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggcatc 149  Q
    |||||| ||||||||||| ||||| | ||||||| ||||| ||||||||| |||||||||||| |||| ||| ||||| |||||    
T  38150099 atcattagtttcagatgagaagagcaattcaatacgtttggcacccttagtaattcctttggaaatcattctgtcaattgcatc 38150182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 38157837 - 38157916
Alignment:
Q  66 atcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatgg 145  Q
    |||||| ||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||  |||| ||| |||||||    
T  38157837 atcattagtttcagatgagaagagcaattcaatacgtttggcacccttagcaattcctttggtaatcattctgtcaatgg 38157916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 36745225 - 36745275
Alignment:
Q  227 tttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  36745225 tttggtaagtcttgaattgtgttatagtcaaacattgtatggagatcaaag 36745275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 35084834 - 35084887
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactct 325  Q
    ||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  35084834 tcaaagctaacttggaaaagatataagatataatagaatcaggcaactcactct 35084887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 35083729 - 35083788
Alignment:
Q  215 agtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||| |||||||||||   |||| ||||||||| ||||||||||||||||||||||||||    
T  35083729 agtggaaatgtgtttggta---cttggattgtgttagagtcaaacatggtatgaagatcaaag 35083788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 36745144 - 36745199
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||| ||||||||| ||||  |||||||||| ||||||||||||    
T  36745144 cctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaagtg 36745199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 38166734 - 38166813
Alignment:
Q  65 tatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatg 144  Q
    |||| ||||||||| ||||||| ||||||||||||  |||| | |||||||| ||||||| ||| ||||||||| |||||    
T  38166734 tatcgtttgtttcatatgacaatagaagttcaatacttttggctcccttagcgattccttgggaaatcaatctaccaatg 38166813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 36745349 - 36745399
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcac 322  Q
    ||||||| ||||||||||||||||||||||||| ||||||| | |||||||    
T  36745349 tcaaagctaacttggaaaagatataagatataacacaatcaggcaactcac 36745399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 34145939 - 34145879
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    ||||||| |||||||||||||||||||||||||||  |||| | |||||| |||| |||||    
T  34145939 tcaaagctaacttggaaaagatataagatataatatgatcaggcaactcattctcaagctt 34145879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 34181496 - 34181556
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    ||||||| |||||||||||||||||||||||||||  |||| | |||||| |||| |||||    
T  34181496 tcaaagctaacttggaaaagatataagatataatatgatcaggcaactcattctcaagctt 34181556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 37883497 - 37883446
Alignment:
Q  92 gttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaat 143  Q
    |||||||| |||||||||||||||||| ||||||||  ||||||| ||||||    
T  37883497 gttcaatacgtttgacacccttagcaactcctttggtaatcaatcaatcaat 37883446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 45585390 - 45585424
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataata 306  Q
    ||||||| |||||||||||||||||||||||||||    
T  45585390 tcaaagctaacttggaaaagatataagatataata 45585424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 33862290 - 33862238
Alignment:
Q  280 aacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    |||||||||||||||||||||||||||  |||| | |||||| |||| |||||    
T  33862290 aacttggaaaagatataagatataatatgatcaggcaactcattctcaagctt 33862238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 34179089 - 34179141
Alignment:
Q  280 aacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    |||||||||||||||||||||||||||  |||| | |||||| |||| |||||    
T  34179089 aacttggaaaagatataagatataatatgatcaggcaactcattctcaagctt 34179141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 23666 - 23787
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| |||| ||||||||  |||||||  | |||||||| |||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  23666 taagggaaaatctgtatggcataatagaaatagtagtatcagttgtttaagaagagaagagaagttcaatatgtttggcacccttagcaattcctttgga 23765  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    |||||||||||||||| |||||    
T  23766 gatcaatctatcaatgacatcc 23787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 23839 - 23894
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| || | ||||||||||| ||||||| ||||    
T  23839 cctttataatggagcataaattgatccaaacttgtggcaaatttagattgatagtg 23894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 25563345 - 25563224
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| |||| ||||||||  |||||||  | |||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  25563345 taagggaaaatctgtatggcataatagaaatagtagtatcagttgtttcagaagagaagagaagttcaatatgtttggcacccttagcaattcctttgga 25563246  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    ||||||||||| |||| |||||    
T  25563245 gatcaatctatgaatgacatcc 25563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 25568960 - 25568839
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| |||| ||||||||  |||||||  | |||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  25568960 taagggaaaatctgtatggcataatagaaatagtagtatcagttgtttcagaagagaagagaagttcaatatgtttggcacccttagcaattcctttgga 25568861  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    ||||||||||| |||| |||||    
T  25568860 gatcaatctatgaatgacatcc 25568839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 26102857 - 26102736
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| |||| ||||||||  |||||||  | |||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  26102857 taagggaaaatctgtatggcataatagaaatagtagtatcagttgtttcagaagagaagagaagttcaatatgtttggcacccttagcaattcctttgga 26102758  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    ||||||||||| |||| |||||    
T  26102757 gatcaatctatgaatgacatcc 26102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 26002828 - 26002707
Alignment:
Q  29 taaggggaaatttgtatggcgaaatagaatcactagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttgga 128  Q
    |||||| |||| ||||||||  |||||||  | |||||| | |||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||    
T  26002828 taagggaaaatctgtatggcataatagaaatagtagtattagttgtttcagaagagaagagaagttcaatatgtttggcaccattagcaattcctttgga 26002729  T
Q  129 gatcaatctatcaatggcatcc 150  Q
    |||||||||||||||| |||||    
T  26002728 gatcaatctatcaatgacatcc 26002707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 25568787 - 25568732
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  25568787 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 25568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 26002655 - 26002600
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  26002655 cctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtg 26002600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 25568585 - 25568525
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactctcgagctt 332  Q
    ||||||| |||||||||||||||||||||||||||  |||| |||||||| |||| |||||    
T  25568585 tcaaagctaacttggaaaagatataagatataatatgatcagggaactcattctcaagctt 25568525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 4164355 - 4164414
Alignment:
Q  91 agttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggcatcc 150  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||| | |||||| |||||    
T  4164355 agttcaatacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatcc 4164414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 4225976 - 4226035
Alignment:
Q  91 agttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatggcatcc 150  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||| | |||||| |||||    
T  4225976 agttcaatacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatcc 4226035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 25563172 - 25563117
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    ||||||||||| |||||||||||||| |||| ||||| ||||| ||||||||||||    
T  25563172 cctttataatgcagcataaattgatccaatcttgtggaaaattcagattgaaagtg 25563117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 26102684 - 26102629
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    ||||||||||| |||||||||||||| |||| ||||| ||||| ||||||||||||    
T  26102684 cctttataatgcagcataaattgatccaatcttgtggaaaattcagattgaaagtg 26102629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 25562968 - 25562934
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataata 306  Q
    ||||||| |||||||||||||||||||||||||||    
T  25562968 tcaaagctaacttggaaaagatataagatataata 25562934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 26002453 - 26002419
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataata 306  Q
    ||||||| |||||||||||||||||||||||||||    
T  26002453 tcaaagctaacttggaaaagatataagatataata 26002419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 26102480 - 26102446
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataata 306  Q
    ||||||| |||||||||||||||||||||||||||    
T  26102480 tcaaagctaacttggaaaagatataagatataata 26102446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 9663590 - 9663535
Alignment:
Q  163 cctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaaagtg 218  Q
    |||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||    
T  9663590 cctttataatggagcataaattgatccaatcttgtgacaaattcagattgaaagtg 9663535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 9663521 - 9663462
Alignment:
Q  215 agtggaagtgtgtttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaag 277  Q
    ||||||| |||||||||||   |||| || |||||||||||||||||||||||||||||||||    
T  9663521 agtggaaatgtgtttggta---cttggatagtgttatagtcaaacatggtatgaagatcaaag 9663462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 9663391 - 9663338
Alignment:
Q  272 tcaaagcaaacttggaaaagatataagatataatacaatcaaggaactcactct 325  Q
    ||||||| |||||| ||||||||||||||||||||| |||| | ||||||||||    
T  9663391 tcaaagctaacttgaaaaagatataagatataatactatcaggcaactcactct 9663338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 12409841 - 12409914
Alignment:
Q  71 ttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatg 144  Q
    |||||| | |||| ||||| ||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||||    
T  12409841 ttgtttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcattctgtcaatg 12409914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 12421901 - 12421974
Alignment:
Q  71 ttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatcaatg 144  Q
    |||||| | |||| ||||| ||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||||    
T  12421901 ttgtttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcattctgtcaatg 12421974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 2223799 - 2223831
Alignment:
Q  101 gtttgacacccttagcaattcctttggagatca 133  Q
    |||||||||||||||||||||||||||| ||||    
T  2223799 gtttgacacccttagcaattcctttggaaatca 2223831  T

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