View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_32 (Length: 341)
Name: NF19898_low_32
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_32 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 13346603 - 13346286
Alignment:
| Q |
26 |
aatggtcatttttggaacaataatagtaaacactgttgaatttagtgactttgcttatatttgaggtcaccaaattatgctgttttttacaaataggttc |
125 |
Q |
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| T |
13346603 |
aatggtcatttttggaacaataatagtaaacactgttgaatttagtgactttgcttatatttgaggtcaccaaattattctctttttttcaaataggttc |
13346504 |
T |
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| Q |
126 |
aaatgaggtatataaacagaaggaaagcatacaatcatgaaatcatcgatattttttgacaatacaca----acgaagaaacannnnnnnattgaaagta |
221 |
Q |
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| T |
13346503 |
aaatgaggtatataaacagaagaaaagcttacaatcatgaaatcatcgatattttttaaaaatacacatgcaacgaagaaacatttttttattgaaagta |
13346404 |
T |
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| Q |
222 |
taattattaaactccccaaactccaagagttattggttacaaagatgattcaaaagaccaattaattatatcatgtatttcaaccaactctccggtagca |
321 |
Q |
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| T |
13346403 |
--attattaaactccccaaactccaagagttatcggttacaaagatgattcaaaagaccaattaattatatcatgtatttcaaccaactctccggtagca |
13346306 |
T |
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| Q |
322 |
gcagagaaaccaactctaac |
341 |
Q |
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| T |
13346305 |
gcagagaaaccaactctaac |
13346286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 13337215 - 13337144
Alignment:
| Q |
270 |
ttcaaaagaccaattaattatatcatgtatttcaaccaactctccggtagcagcagagaaaccaactctaac |
341 |
Q |
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| T |
13337215 |
ttcaaaagaccaattaatgatatcatgtgtttcaaccaattctccagtagcagcagagaaaccaactctaac |
13337144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 13340556 - 13340485
Alignment:
| Q |
270 |
ttcaaaagaccaattaattatatcatgtatttcaaccaactctccggtagcagcagagaaaccaactctaac |
341 |
Q |
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| T |
13340556 |
ttcaaaagaccaattaatgatatcatgtgtttcaaccaattctccagtagcagcagagaaaccaactctaac |
13340485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 341
Target Start/End: Complemental strand, 13355105 - 13354983
Alignment:
| Q |
222 |
taattattaaactccccaaactccaagagttattggtta---caaagatgattcaaaagaccaattaattatatcatgtatttcaaccaactctccggta |
318 |
Q |
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|||| ||| ||||||||||||| ||||||||| |||||| ||| | ||||||||||||||||||||| ||||||||| ||||||||| ||||| ||| |
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| T |
13355105 |
taataatttaactccccaaacttcaagagttactggttattacaaggctgattcaaaagaccaattaatgatatcatgtgtttcaaccagttctcctgta |
13355006 |
T |
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| Q |
319 |
gcagcagagaaaccaactctaac |
341 |
Q |
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| T |
13355005 |
gttgcagagaaacctattctaac |
13354983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 13340772 - 13340718
Alignment:
| Q |
60 |
gttgaatttagtgactttg-cttatatttgaggtcaccaaattatgctgtttttt |
113 |
Q |
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| T |
13340772 |
gttgaatttagtgacttttacttatattttaggtcaccaaattatactctttttt |
13340718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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