View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_34 (Length: 333)
Name: NF19898_low_34
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 131225 - 131526
Alignment:
| Q |
16 |
atgagtagtaatattaaggggaacagaacttgaaaccctagcaatctgttttttcttttcaagagcagagcgtttaacaattaaacccttacattccaaa |
115 |
Q |
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| T |
131225 |
atgagtagtaatattaaggggaacagaacttgaaaccctagcaatctgttttttcttttcaagagcagagcgtttaacaattaaacccttacattccaaa |
131324 |
T |
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| Q |
116 |
ctcctcaaaacatagaaaaagttattgggatcaatacgtagctgtttagcaagctgagtttgagtgataccgttgtgtttggcattagcaagaagatgga |
215 |
Q |
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| T |
131325 |
ctcctcaaaacatagaaaaagttattgggatcaatacgtagctgtttagcaagctgagtttgagtgataccgttgtgtttggcattagcaagaagatgga |
131424 |
T |
|
| Q |
216 |
gaacgcggagttgagattgttggagtgattgagaatcgtaaatgccgaagaagttttcggttagggtttgttgagggaagattgtgatattggggtcgtt |
315 |
Q |
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| T |
131425 |
gaacgcggagttgagattgttggagtgattgagaatcgtaaatgccgaagaagttttcggttagggtttgttgagggaagattgtgatattggggtcgtt |
131524 |
T |
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| Q |
316 |
ga |
317 |
Q |
| |
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|| |
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| T |
131525 |
ga |
131526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 26180503 - 26180604
Alignment:
| Q |
16 |
atgagtagtaatattaaggggaacagaacttgaaaccctagcaatctgttttttcttttcaagagcagagcgtttaacaattaaacccttacattccaaa |
115 |
Q |
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| T |
26180503 |
atgagtagtaatattaagaggaacagaacctgaaaccctagatatttttttcttctattcaaggacagatcgtttgacgattaagcccttacactccaaa |
26180602 |
T |
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| Q |
116 |
ct |
117 |
Q |
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|| |
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| T |
26180603 |
ct |
26180604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 26269658 - 26269597
Alignment:
| Q |
16 |
atgagtagtaatattaaggggaacagaacttgaaaccctagcaatctgttttttcttttcaa |
77 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||||| |
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| T |
26269658 |
atgagtagtaatattaagaggaacagaacttgaaaccctagatatttgtttcttcttttcaa |
26269597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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