View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19898_low_37 (Length: 303)
Name: NF19898_low_37
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 8340465 - 8340740
Alignment:
| Q |
21 |
acccgttgcggattttttattcgggtacccatcgggcctgggtctaattgtcatccttattagcgagcaaggaga---tttttggaaccacgttgaactt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
8340465 |
acccgttgcgggttttttattcgggtacccatcgggcctgggtccaattgccatccctattagcgagcaaggagaacatttttgggaccacattgaactt |
8340564 |
T |
|
| Q |
118 |
tgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatgcattcgaaattacaatgttatttcttctgtctttttcagag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8340565 |
tgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatgcattcgaaattacaatgttatttcttctgtctttttcagag |
8340664 |
T |
|
| Q |
218 |
cttatttcatgtaggtccttgcttggggaggaactagtcgtagtcgaaatagaatgacttgactatcaactctctg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8340665 |
cttatttcatgtaggtccttgcttggggagaaactagtcgtcgtcgaaatagaatgacttgactatcaactctctg |
8340740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 95 - 279
Target Start/End: Original strand, 8350430 - 8350616
Alignment:
| Q |
95 |
atttttggaaccacgttgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatgcattcgaaattacaatgt |
194 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
8350430 |
atttttgggaccacatagaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttgaatatgcattcgaaattacaatgt |
8350529 |
T |
|
| Q |
195 |
tatttcttctgtctttttcagagcttatttcatgtaggt--ccttgcttggggaggaactagtcgtagtcgaaatagaatgacttga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
8350530 |
tatttcttctgtctttttcagagcttatttcatgtaagtaacctagcatggggaggaactagtcgtggtctaaatagtatgacttga |
8350616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 8353536 - 8353666
Alignment:
| Q |
95 |
atttttggaaccacgttgaactttgaaaattcttcaatgtatgcatatatttt-gtggctgctttggaaacttgttgattatgcattcgaaattacaatg |
193 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||| | |
|
|
| T |
8353536 |
atttttgggaccacatagaactttgaaaattcttctacgtatgcatatatttttgtggctgctttggacacttgctgattaagtattcgaaattacaacg |
8353635 |
T |
|
| Q |
194 |
ttatttcttctgtctttttcagagcttattt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8353636 |
ttatttcttctgtctttttcagagcttattt |
8353666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 8256216 - 8256267
Alignment:
| Q |
173 |
tatgcattcgaaattacaatgttatttcttctgtctttttcagagcttattt |
224 |
Q |
| |
|
|||| |||||| ||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
8256216 |
tatgtattcgatattacaatgttgtttcgtttgtctttttcagagcttattt |
8256267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 22306310 - 22306280
Alignment:
| Q |
46 |
tacccatcgggcctgggtctaattgtcatcc |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22306310 |
tacccatcgggcctgggtctaattgtcatcc |
22306280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 3551170 - 3551138
Alignment:
| Q |
44 |
ggtacccatcgggcctgggtctaattgtcatcc |
76 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
3551170 |
ggtacccatcgggcctgggtccaattgtcatcc |
3551138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University