View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_4 (Length: 624)

Name: NF19898_low_4
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_4
NF19898_low_4
[»] chr4 (30 HSPs)
chr4 (335-609)||(327284-327555)
chr4 (12-270)||(326968-327220)
chr4 (59-145)||(42540179-42540265)
chr4 (58-155)||(44833913-44834010)
chr4 (59-166)||(23780214-23780321)
chr4 (100-180)||(7672558-7672638)
chr4 (58-166)||(18740124-18740232)
chr4 (105-166)||(43364229-43364290)
chr4 (62-155)||(48141302-48141391)
chr4 (61-118)||(34214453-34214510)
chr4 (67-139)||(14126311-14126383)
chr4 (104-163)||(10381864-10381923)
chr4 (59-119)||(19747569-19747629)
chr4 (59-119)||(19792177-19792237)
chr4 (74-125)||(55149012-55149063)
chr4 (70-143)||(4485251-4485319)
chr4 (104-141)||(10395455-10395492)
chr4 (63-139)||(6147477-6147552)
chr4 (59-143)||(10334109-10334193)
chr4 (58-117)||(49761685-49761744)
chr4 (59-97)||(10395484-10395522)
chr4 (201-259)||(23780405-23780463)
chr4 (59-143)||(23689413-23689497)
chr4 (69-152)||(3257819-3257897)
chr4 (58-97)||(10381833-10381872)
chr4 (86-145)||(19677989-19678048)
chr4 (201-270)||(19677819-19677893)
chr4 (57-107)||(45628547-45628597)
chr4 (109-141)||(20678274-20678306)
chr4 (105-137)||(32896653-32896685)
[»] chr2 (10 HSPs)
chr2 (57-182)||(33382009-33382134)
chr2 (59-155)||(27081057-27081153)
chr2 (58-145)||(14108775-14108862)
chr2 (64-145)||(5722756-5722837)
chr2 (201-254)||(5722933-5722986)
chr2 (201-270)||(33381883-33381947)
chr2 (105-166)||(13783417-13783478)
chr2 (55-109)||(1484124-1484178)
chr2 (201-270)||(27080909-27080983)
chr2 (78-138)||(32971353-32971413)
[»] chr6 (13 HSPs)
chr6 (59-182)||(18271665-18271793)
chr6 (70-165)||(20836610-20836705)
chr6 (62-179)||(33427640-33427757)
chr6 (59-135)||(12127251-12127327)
chr6 (56-141)||(14569912-14569997)
chr6 (104-174)||(9619557-9619627)
chr6 (59-97)||(30369538-30369576)
chr6 (59-102)||(9082156-9082199)
chr6 (201-248)||(20836794-20836841)
chr6 (89-144)||(26403235-26403290)
chr6 (57-135)||(20116408-20116486)
chr6 (62-140)||(12852267-12852345)
chr6 (201-235)||(18271854-18271888)
[»] chr7 (20 HSPs)
chr7 (59-182)||(27305494-27305617)
chr7 (62-145)||(10595922-10596005)
chr7 (59-166)||(19367098-19367200)
chr7 (59-166)||(43341017-43341124)
chr7 (58-156)||(4922692-4922790)
chr7 (63-145)||(23777021-23777103)
chr7 (92-166)||(23803055-23803129)
chr7 (59-155)||(16813809-16813901)
chr7 (59-143)||(31305189-31305273)
chr7 (59-135)||(35912175-35912251)
chr7 (96-145)||(10596089-10596138)
chr7 (202-270)||(4922548-4922611)
chr7 (63-144)||(42731054-42731125)
chr7 (59-182)||(23167911-23168030)
chr7 (204-243)||(10596070-10596109)
chr7 (204-243)||(10596203-10596242)
chr7 (62-125)||(45852502-45852565)
chr7 (59-141)||(43951273-43951355)
chr7 (202-235)||(19367271-19367304)
chr7 (72-133)||(20335639-20335700)
[»] chr3 (17 HSPs)
chr3 (57-156)||(36436036-36436135)
chr3 (59-166)||(55216817-55216919)
chr3 (59-166)||(8473238-8473340)
chr3 (85-144)||(37152706-37152765)
chr3 (59-167)||(25653530-25653639)
chr3 (62-145)||(40654096-40654174)
chr3 (100-166)||(29630149-29630215)
chr3 (104-182)||(33186285-33186367)
chr3 (59-138)||(54801612-54801686)
chr3 (201-263)||(29630049-29630111)
chr3 (62-134)||(29596887-29596959)
chr3 (63-166)||(11750023-11750126)
chr3 (59-144)||(867546-867626)
chr3 (59-166)||(26662040-26662137)
chr3 (201-235)||(33186189-33186223)
chr3 (59-139)||(34607318-34607397)
chr3 (201-233)||(40654233-40654265)
[»] chr1 (16 HSPs)
chr1 (57-144)||(22786645-22786732)
chr1 (62-138)||(34821605-34821680)
chr1 (57-140)||(5993536-5993619)
chr1 (83-165)||(44011747-44011829)
chr1 (82-145)||(32567090-32567153)
chr1 (100-165)||(85712-85777)
chr1 (69-146)||(8812386-8812463)
chr1 (59-103)||(45376421-45376465)
chr1 (67-152)||(42254266-42254346)
chr1 (51-138)||(52247466-52247548)
chr1 (70-144)||(47756453-47756527)
chr1 (79-139)||(28283181-28283241)
chr1 (201-248)||(47930895-47930942)
chr1 (201-235)||(8812528-8812562)
chr1 (63-135)||(15661573-15661640)
chr1 (59-123)||(39549648-39549711)
[»] chr5 (18 HSPs)
chr5 (62-166)||(5131302-5131406)
chr5 (59-149)||(19914351-19914431)
chr5 (62-145)||(22920845-22920923)
chr5 (59-145)||(43259887-43259968)
chr5 (82-141)||(10476566-10476625)
chr5 (69-145)||(27946869-27946945)
chr5 (58-138)||(34071392-34071472)
chr5 (64-141)||(29452330-29452407)
chr5 (59-145)||(5791776-5791862)
chr5 (201-259)||(19914485-19914543)
chr5 (59-133)||(3883734-3883808)
chr5 (59-145)||(43399355-43399436)
chr5 (59-144)||(6644865-6644949)
chr5 (82-143)||(16489133-16489194)
chr5 (93-146)||(27514527-27514580)
chr5 (201-235)||(27514402-27514436)
chr5 (207-253)||(29445253-29445299)
chr5 (62-103)||(11672315-11672356)
[»] chr8 (12 HSPs)
chr8 (59-166)||(30595426-30595523)
chr8 (57-156)||(42651389-42651493)
chr8 (59-141)||(35699690-35699767)
chr8 (59-144)||(3639863-3639943)
chr8 (59-144)||(18605171-18605256)
chr8 (58-102)||(3867680-3867724)
chr8 (59-135)||(11781582-11781658)
chr8 (201-235)||(387723-387757)
chr8 (201-243)||(30595575-30595617)
chr8 (58-159)||(42326690-42326788)
chr8 (62-139)||(2259758-2259830)
chr8 (201-250)||(18605352-18605401)
[»] scaffold0024 (2 HSPs)
scaffold0024 (57-135)||(60031-60104)
scaffold0024 (201-256)||(60182-60232)
[»] scaffold0198 (1 HSPs)
scaffold0198 (58-113)||(10229-10284)
[»] scaffold0086 (1 HSPs)
scaffold0086 (104-145)||(20692-20733)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 335 - 609
Target Start/End: Original strand, 327284 - 327555
Alignment:
Q  335 cccacccctagtgattactctgcgaacctttgtatcttaacnnnnnnnnnnttgtctacataaacatcactcaattgatagaatattacatgtaatataa 434  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  327284 cccacccctagtgattactctgcgaacctttgtatcttaacaaaaaaaa---tgtctatgtaaacatcactcaattgataggatattacatgtaatataa 327380  T
Q  435 aagagtcagaggtttggatttctttcttattcaccttattagtgaatttcctgacattagactatttgatataaataaaaaatgaactagacacatccat 534  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  327381 aagggtcagaggtttggatttctttcttattcaccttattagtgaatttcctgacattagactatttgatataaataaaaaatgcacgagacacatccat 327480  T
Q  535 agttttaaattgggatgttgatgtggtcgtggctatggttgcagtgcaacatagtgttgttgtagacattactac 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327481 agttttaaattgggatgttgatgtggtcgtggctatggttgcagtgcaacatagtgttgttgtagacattactac 327555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 326968 - 327220
Alignment:
Q  12 atgaagcctaattaataccataatttaaattattttgtggtagtgattaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  326968 atgaagcctaattaataccataatttaaattattttgtggtagtgattaggggtgggcatggttgagttcgggatgaaaaatgaaccgaactaaactgaa 327067  T
Q  112 ctgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaactatttcaaaccgaactgnnnnnnnnnnnnnnnnnncaaatgaaatt 211  Q
     ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||                  |||||||||||    
T  327068 ttgtttgctaaatttaaaataactgaactgaactgtttgcattttaaattgaactgtttcaaaccgaactgaaaaaaatatgaaaaaaacaaatgaaatt 327167  T
Q  212 gaattttagttacagaactgaactaaactgttccgaactgaactgttttgaattgaact 270  Q
    |||||||||||||| ||||||||||||||||      ||||||||||||||| ||||||    
T  327168 gaattttagttacaaaactgaactaaactgt------ctgaactgttttgaactgaact 327220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 42540179 - 42540265
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  42540179 taggggtgggcatggttcagttcgagatgaaaacagaaccgaactgaactgaattgtttgctaaatttaaaataattgaactgaact 42540265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 44833913 - 44834010
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcattt 155  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  44833913 ttaggggtgggtatggttcggttcgggatgaaaattgaaccgaatcaaattgaactgtttgctaaatttaaaataactgaactgaactgtttgtattt 44834010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 23780214 - 23780321
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | |||| || |||||||||||| |||||||| ||||||||||| |||| ||||| |    
T  23780214 taggggtggacatggttcagttcgggatgaaaactgaaccgaattgaacttaattgtttgctaaatctaaaataattgaactgaactgtttgtatttcga 23780313  T
Q  159 attgaact 166  Q
    | ||||||    
T  23780314 actgaact 23780321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 7672558 - 7672638
Alignment:
Q  100 aactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaactatttcaaaccgaac 180  Q
    |||||||| |||||||||||||||||||||||||||||||| || | |||||||||| ||||||||| |||||||||||||    
T  7672558 aactaaacagaactgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaattgaactgtttcaaaccgaac 7672638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 18740232 - 18740124
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttca 157  Q
    |||||||||| ||||||||| || ||||| ||||||||||||||  ||| |||||| |||||||||||||||||||  |||||||| | ||||||||||     
T  18740232 ttaggggtggacatggttcaatttgggataaaaactgaaccgaatcaaaatgaactatttgctaaatttaaaataatagaactgaattgtttgcatttcg 18740133  T
Q  158 aattgaact 166  Q
    || ||||||    
T  18740132 aactgaact 18740124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 43364290 - 43364229
Alignment:
Q  105 aactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaact 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  43364290 aactgaactgtttgctaaatttaaaataactgaactgaactgtttgcatttcgaatcgaact 43364229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 48141391 - 48141302
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcattt 155  Q
    ||||||||||||||| ||||| ||||||    |||||||| |||  |||||||||||||||||||||||||||||||||||| | |||||||||    
T  48141391 gggtgggcatggttcggttcgagatgaa----gaaccgaagtaaggtgaactgtttgctaaatttaaaataactgaactgaattgtttgcattt 48141302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 34214453 - 34214510
Alignment:
Q  61 ggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttg 118  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  34214453 ggggtgggcatggtttggttcgggatgaaaactgaaccgaactaaactgaattgtttg 34214510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 14126311 - 14126383
Alignment:
Q  67 ggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaac 139  Q
    |||||||||||||| | ||||||||||||| |||||  |||| ||||||||||||||||||||| ||||||||    
T  14126311 ggcatggttcagtttgagatgaaaactgaatcgaaccgaactcaactgtttgctaaatttaaaaaaactgaac 14126383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 10381864 - 10381923
Alignment:
Q  104 aaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattga 163  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||    
T  10381864 aaactgaactgtttgctaaatttaaaataaatgaactgaactggttgcatttcgaattga 10381923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 19747629 - 19747569
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgc 119  Q
    |||||||||||||||||||  | |||||||||||| |||||||| ||||||||||||||||    
T  19747629 taggggtgggcatggttcaaattgggatgaaaactaaaccgaaccaaactgaactgtttgc 19747569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 19792177 - 19792237
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgc 119  Q
    |||||||||||||||||||  | |||||||||||| |||||||| ||||||||||||||||    
T  19792177 taggggtgggcatggttcaaattgggatgaaaactaaaccgaaccaaactgaactgtttgc 19792237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 55149012 - 55149063
Alignment:
Q  74 ttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatt 125  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  55149012 ttcagtttgggatgaaaactgaaccgaactgaacttaactgtttgctaaatt 55149063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 4485251 - 4485319
Alignment:
Q  70 atggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaa 143  Q
    ||||||||||||||||| ||||||||||||     ||||||| ||||||||| |||||||||||||||| ||||    
T  4485251 atggttcagttcgggataaaaactgaaccg-----aactgaattgtttgctagatttaaaataactgaaatgaa 4485319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 10395492 - 10395455
Alignment:
Q  104 aaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10395492 aaactgaactgtttgctaaatttaaaataactgaactg 10395455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 6147552 - 6147477
Alignment:
Q  63 ggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaac 139  Q
    |||||||||||||  ||||||||||||||| ||||| |||| || |||||| |||| ||||||| ||||||||||||    
T  6147552 ggtgggcatggtttggttcgggatgaaaacggaaccaaactgaattgaactatttgataaattt-aaataactgaac 6147477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10334109 - 10334193
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaa 143  Q
    |||||||| ||||||||| ||| || ||||||||||||  ||||  ||||||| |||||| |||||| ||||||| |||||||||    
T  10334109 taggggtgtgcatggttctgtttggaatgaaaactgaattgaaccgaactgaattgtttgttaaattcaaaataattgaactgaa 10334193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 49761685 - 49761744
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgttt 117  Q
    |||||||| || |||||| ||||||| ||||||||||||||||||| |||| ||||||||    
T  49761685 ttaggggtaggtatggttaagttcggaatgaaaactgaaccgaactgaactaaactgttt 49761744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 10395522 - 10395484
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaac 97  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10395522 taggggtgggcatggttcagttcgtgatgaaaactgaac 10395484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 23780405 - 23780463
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactgttt 259  Q
    ||||||||||||||||| ||||||| ||||||| | || ||||| ||||||||||||||    
T  23780405 caaatgaaattgaatttgagttacataactgaattgaattgttctgaactgaactgttt 23780463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 23689497 - 23689413
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaa 143  Q
    |||||||||||||| ||  |||| ||||||||||| ||| |||  ||| |||| |||||||||||| |||||||| |||| ||||    
T  23689497 taggggtgggcatgattgggttcaggatgaaaactaaacggaagcaaaatgaattgtttgctaaatctaaaataaatgaattgaa 23689413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 3257897 - 3257819
Alignment:
Q  69 catggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgca 152  Q
    |||||||  |||||||||||||| |||| ||     |||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  3257897 catggtttggttcgggatgaaaattgaatcg-----aactgaactgtttggtaaatttataataattgaactgaactgtttgca 3257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 10381833 - 10381872
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaac 97  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10381833 ttagaggtgggcatggttcagttcggaatgaaaactgaac 10381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 19678048 - 19677989
Alignment:
Q  86 tgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||| |||| | |||||||||||| | ||||||||||||||||||||| || ||||||    
T  19678048 tgaaaagtgaatcaaactaaactgaaatatttgctaaatttaaaataactaaaatgaact 19677989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 19677893 - 19677819
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaact-----gaactgttttgaattgaact 270  Q
    |||| ||||| ||||||||||||| ||| |||||| ||||||||||||||     |||||||||||||| |||||    
T  19677893 caaaagaaatcgaattttagttaccgaattgaactgaactgttccgaacttaaccgaactgttttgaatcgaact 19677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 45628547 - 45628597
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaac 107  Q
    ||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||    
T  45628547 attagaggtggggatggttcagttcgggatgagaactgaaccaaaccaaac 45628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 20678274 - 20678306
Alignment:
Q  109 gaactgtttgctaaatttaaaataactgaactg 141  Q
    ||||||||||||||||||||||||| |||||||    
T  20678274 gaactgtttgctaaatttaaaataattgaactg 20678306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 32896685 - 32896653
Alignment:
Q  105 aactgaactgtttgctaaatttaaaataactga 137  Q
    |||||||||||||||||||||||| ||||||||    
T  32896685 aactgaactgtttgctaaatttaagataactga 32896653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 33382134 - 33382009
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttc 156  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||||||||    
T  33382134 attaggggtgggcatggttcaattcgggataaaaactgaaccgaactgaactgaattgtttgctaactttaaaataactgaacttaactgtttgcatttc 33382035  T
Q  157 aaattgaactatttcaaaccgaactg 182  Q
     ||||||||| |||||||||||||||    
T  33382034 gaattgaactgtttcaaaccgaactg 33382009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 27081153 - 27081057
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcattt 155  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  27081153 taggggtgggcacggttcagttcggaatgaaaactgaaccgaactgaactgaactgtttgctaaatttaaaataactgaattgaactgtttgcattt 27081057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 14108862 - 14108775
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||||  |||||||||||||  |||||||||||||||||||| |||||||||||||  |||||||||||||| |||| ||||||    
T  14108862 ttaggggtgaacatggttcagttcaagatgaaaactgaaccgaactgaactgaactgtttattaaatttaaaataattgaattgaact 14108775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 5722756 - 5722837
Alignment:
Q  64 gtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||| |||||||| ||| |||||||||| |||||||||| ||| |||| | |||||||||||||||||||||||| ||||||    
T  5722756 gtggacatggttcggtttgggatgaaaagtgaaccgaaccaaattgaattatttgctaaatttaaaataactgaattgaact 5722837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 5722933 - 5722986
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaac 254  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  5722933 caaacgaaattgaattttagttaccgaactgaactgaactgttccgaactgaac 5722986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 33381947 - 33381883
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactgttttgaattgaact 270  Q
    |||||||||||||||||||||||| ||||||||||     ||||||||||||||||||| ||||||||||    
T  33381947 caaatgaaattgaattttagttaccgaactgaact-----gttccgaactgaactgtttcgaattgaact 33381883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 13783478 - 13783417
Alignment:
Q  105 aactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaact 166  Q
    ||||||| |||||| |||||||||||||||| ||||||| | ||||||||| ||||||||||    
T  13783478 aactgaattgtttgttaaatttaaaataactaaactgaattgtttgcattttaaattgaact 13783417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 1484178 - 1484124
Alignment:
Q  55 tgattaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactg 109  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||| ||||| ||||    
T  1484178 tgattaggagtgagcatggttcggttcgggatgaaaactgaaccaaactagactg 1484124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 27080983 - 27080909
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgtt-----ccgaactgaactgttttgaattgaact 270  Q
    ||||||||||||||||||||||||  ||||||||| |||||||      ||||||||||||||||||| ||||||    
T  27080983 caaatgaaattgaattttagttaccaaactgaactgaactgtttcgaatcgaactgaactgttttgaactgaact 27080909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 32971413 - 32971353
Alignment:
Q  78 gttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaa 138  Q
    |||||||||||||||| ||| ||  | |||||| ||||||| |||||||||||||| ||||    
T  32971413 gttcgggatgaaaactaaactgagttgaactgagctgtttggtaaatttaaaataattgaa 32971353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 18271665 - 18271793
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  18271665 taggggtgggcatggttcagttctggatgaaaactgaaccgaactgaactgaactgtgtgctaaatttaaaataactgaactgaactgtttgcatttcaa 18271764  T
Q  159 at-----tgaactatttcaaaccgaactg 182  Q
    |      |||||| |||||||||||||||    
T  18271765 accaaactgaactgtttcaaaccgaactg 18271793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 20836610 - 20836705
Alignment:
Q  70 atggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaac 165  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| || |||||    
T  20836610 atggttcagttcgggatgaaaactgaaccgaactgaactaaactgtttgctaaatctaaaataactgaactgaactgtttgcatttcgaactgaac 20836705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 33427640 - 33427757
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaatt 161  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||||  || |    
T  33427640 gggtggacattgttcagttcggaatgaaaactgaaccgaactaaactgaattatttgttaaatttaaaataactgaattgaactgtttgcattttgaact 33427739  T
Q  162 gaactatttcaaaccgaa 179  Q
    ||||| ||||||| ||||    
T  33427740 gaactgtttcaaatcgaa 33427757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 12127251 - 12127327
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  12127251 taggggtgggtatggtttggttcgggatgaaaacttaaccgaactaaactgaactgtttgcgaaattcaaaataact 12127327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 14569997 - 14569912
Alignment:
Q  56 gattaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    |||||||| || |||||||||| ||| |||||||||||||| | || |||||| ||||||||  ||| ||||||||||||||||||    
T  14569997 gattagggatgtgcatggttcaattcaggatgaaaactgaatcaaattaaactaaactgtttattaagtttaaaataactgaactg 14569912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 9619627 - 9619557
Alignment:
Q  104 aaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaactatttcaaa 174  Q
    |||||||||||||||  ||||||||||||||||||| ||||| |||||||||  || |||||| |||||||    
T  9619627 aaactgaactgtttgtcaaatttaaaataactgaaccgaactgtttgcattttgaactgaactgtttcaaa 9619557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 30369538 - 30369576
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaac 97  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30369538 taggggtgggcatggttcagttcgggatgaaaactgaac 30369576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 9082199 - 9082156
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaac 102  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  9082199 taggggtgggcatggttcggttcgggatgaaaactaaaccgaac 9082156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 20836794 - 20836841
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaa 248  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  20836794 caaatgaaattgaattttagttaccgaactgaactgaactgtttcgaa 20836841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 26403235 - 26403290
Alignment:
Q  89 aaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||||||||| |||||    
T  26403235 aaaccgaaccgaactgaactggactgtttgataaatttaaaataactgaattgaac 26403290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 20116486 - 20116408
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    ||||||||||| ||||| ||  ||||||||||||| |||| | ||| ||||| ||||||||| | ||||||||||||||    
T  20116486 attaggggtggacatggatcgattcgggatgaaaattgaaactaaccaaactaaactgtttgtttaatttaaaataact 20116408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 12852345 - 12852267
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaact 140  Q
    |||||| ||| |||| ||| |||||||||||||||||||||  | || || |||||| ||||||||||| |||| ||||    
T  12852345 gggtggacattgttcggtttgggatgaaaactgaaccgaaccgatctaaattgtttgttaaatttaaaacaactaaact 12852267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 18271854 - 18271888
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaact 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  18271854 caaatgaaattgaattttagttactgaactgaact 18271888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 27305494 - 27305617
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||| |||||||| |||| |||||||||||||||||||  |||||| | ||||||||||||||||||||||| ||||||||| || ||||||  |    
T  27305494 taggggtggccatggttcggttcaggatgaaaactgaaccgaatcaaactgcattgtttgctaaatttaaaataactaaactgaactgttagcattttga 27305593  T
Q  159 attgaactatttcaaaccgaactg 182  Q
    |||||||| |||||||||||||||    
T  27305594 attgaactgtttcaaaccgaactg 27305617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 10595922 - 10596005
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10595922 gggtggacatggttcagtttgggatgaaaactaaaccgaactgaactgaactgtttgctaaatttaaaataactgaactgaact 10596005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 19367098 - 19367200
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    |||||||||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  19367098 taggggtgggcatggttcagttcgggatgaaaactgaatcg-----aactgaactgtttgctaaatttaaaataactgaactgaactgtttgtatttcga 19367192  T
Q  159 attgaact 166  Q
    | ||||||    
T  19367193 actgaact 19367200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 43341017 - 43341124
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||| |||  |||||||||| |    
T  43341017 tagggatgggaatggttcagttcgggatgaaaactgaaccaaattaaactgaattgtttgataaatttaaaataactgaactaaaccgtttgcatttcga 43341116  T
Q  159 attgaact 166  Q
    | ||||||    
T  43341117 actgaact 43341124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 4922790 - 4922692
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttc 156  Q
    |||||||||| |||||||||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  4922790 ttaggggtggacatggttcagtttgggataaaaactgatccaaactgaactgaattgtttgctaaatttaaaataactgaactaaactatttacatttc 4922692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 23777021 - 23777103
Alignment:
Q  63 ggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    ||||||||||||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  23777021 ggtgggcatggttcagttcgaaacgaaaactgaatcgaactaaactgaactgtttgctaaatttaaaataattgaactgaact 23777103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 23803055 - 23803129
Alignment:
Q  92 ctgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaact 166  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  23803055 ctgaaccgaaccaaactgaattgtttgctaaatttaaaataattgaactgaactgtttacatttcgaattgaact 23803129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 16813901 - 16813809
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaa-ctgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcattt 155  Q
    |||||||||  ||| |||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  16813901 taggggtggatatgattcagttcgggatgaaaaactgaaccgaact-----gaactgtttgctaaatttaaaataactgaacagaactgtttgcattt 16813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 31305189 - 31305273
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaa 143  Q
    |||||||||| ||||||  |||||||||||||| ||||||||||  || |||||||||| ||||||||||||||| |||||||||    
T  31305189 taggggtgggtatggtttggttcgggatgaaaaatgaaccgaacagaagtgaactgtttactaaatttaaaataattgaactgaa 31305273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 35912251 - 35912175
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| |||||||| |||||  ||||||||||||||||    
T  35912251 taggggtgggcatggttcagttcgaaatgaaaactaaaccgaaccaaactgaattgttttttaaatttaaaataact 35912175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 10596089 - 10596138
Alignment:
Q  96 accgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10596089 accgaactgaactgaactgtttgctaaatttaaaataactgaactgaact 10596138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 4922611 - 4922548
Alignment:
Q  202 aaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactgttttgaattgaact 270  Q
    ||||||||||||||||||||||| ||||||||||      || ||||||||||||||||||||||||||    
T  4922611 aaatgaaattgaattttagttaccgaactgaactt-----tttcgaactgaactgttttgaattgaact 4922548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 42731054 - 42731125
Alignment:
Q  63 ggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    |||||| |||||||||||||||||||||||||          |||||||||||||||||||||||||| |||| ||||||||    
T  42731054 ggtgggtatggttcagttcgggatgaaaactg----------aactgaactgtttgctaaatttaaaagaactcaactgaac 42731125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 23168030 - 23167911
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgct-aaatttaaaataactgaactgaactatttgcatttca 157  Q
    |||||||||||||||||||| ||  ||||||||||||||||     | ||||| |||||||| |||| |||||||||| ||| | ||| ||||||||||     
T  23168030 taggggtgggcatggttcagctcaagatgaaaactgaaccg-----acctgaattgtttgctaaaatctaaaataactaaacggcactgtttgcatttcg 23167936  T
Q  158 aattgaactatttcaaaccgaactg 182  Q
    |  ||||||  | ||||||||||||    
T  23167935 atctgaactggtccaaaccgaactg 23167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 10596070 - 10596109
Alignment:
Q  204 atgaaattgaattttagttacagaactgaactaaactgtt 243  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  10596070 atgaaattgaattttagttaccgaactgaactgaactgtt 10596109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 10596203 - 10596242
Alignment:
Q  204 atgaaattgaattttagttacagaactgaactaaactgtt 243  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  10596203 atgaaattgaattttagttaccgaactgaactgaactgtt 10596242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 45852565 - 45852502
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatt 125  Q
    ||||||| ||||||  |||||||||||||| |||| |||| |||||| || |||||||||||||    
T  45852565 gggtgggtatggtttggttcgggatgaaaattgaatcgaattaaactaaattgtttgctaaatt 45852502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 43951273 - 43951355
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    ||||||||| |||| |||| || ||| |||||| ||||   |||| |||| || ||||||||||||||||||||| |||||||    
T  43951273 taggggtggacatgattcaatttggggtgaaaattgaattaaactgaactaaattgtttgctaaatttaaaataattgaactg 43951355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 19367271 - 19367304
Alignment:
Q  202 aaatgaaattgaattttagttacagaactgaact 235  Q
    ||||||||||||||||||||||| ||||||||||    
T  19367271 aaatgaaattgaattttagttaccgaactgaact 19367304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 20335639 - 20335700
Alignment:
Q  72 ggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataa 133  Q
    ||||||||| |||||||||||||||  ||||   | ||||||||||| ||||||||||||||    
T  20335639 ggttcagtttgggatgaaaactgaattgaaccgtattgaactgtttgataaatttaaaataa 20335700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 36436036 - 36436135
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttc 156  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| || |||||| ||| ||||||    
T  36436036 attagggatgggcatggttcagttcgggatgaaaacagaaccgaaccaaattgaactgtttgctaaatttaaaataactaaattgaactgtttccatttc 36436135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 55216919 - 55216817
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||||||||||||| || |||||||||||||||| |||||     ||||| |||| |||||||||||||||||||||||||| |||||||||| |    
T  55216919 taggggtgggcatggttcaattagggatgaaaactgaactgaact-----gaactatttgttaaatttaaaataactgaactgaactgtttgcatttcga 55216825  T
Q  159 attgaact 166  Q
    | ||||||    
T  55216824 actgaact 55216817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 8473340 - 8473238
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||  ||||||||||||| |||||||||||||| ||     |||||||||||||||||||| |||| ||||||||||||||| |||||||||  |    
T  8473340 taggggtgaacatggttcagttcaggatgaaaactgaatcg-----aactgaactgtttgctaaatctaaactaactgaactgaactctttgcattttga 8473246  T
Q  159 attgaact 166  Q
    ||||||||    
T  8473245 attgaact 8473238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 37152765 - 37152706
Alignment:
Q  85 atgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37152765 atgaaaattgaaccgaactaaattgaactgtttgctaaatttaaaataactgaactgaac 37152706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 25653639 - 25653530
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaattt-aaaataactgaactgaactatttgcatttca 157  Q
    ||||||||||||||| || ||||||||||||||||||||||||   |||| ||||||||| ||||||| ||||||||||||  | ||| ||||||||| |    
T  25653639 taggggtgggcatggctcggttcgggatgaaaactgaaccgaatcgaactaaactgtttgataaatttaaaaataactgaatcgtactgtttgcatttta 25653540  T
Q  158 aattgaacta 167  Q
    || |||||||    
T  25653539 aactgaacta 25653530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 40654096 - 40654174
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||| |||||||||||||||||| ||||||| ||||||||     |||||||||| ||||||||||||||||||||||||||    
T  40654096 gggtggtcatggttcagttcgggataaaaactgtaccgaact-----gaactgtttgttaaatttaaaataactgaactgaact 40654174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 29630215 - 29630149
Alignment:
Q  100 aactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaact 166  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  29630215 aactgaactgaactgtttgctaaatttgaaataactgaactgaactgtttgcatttcgaactgaact 29630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 33186367 - 33186285
Alignment:
Q  104 aaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttca-----aattgaactatttcaaaccgaactg 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||     ||||||||| |||||||||||||||    
T  33186367 aaactgaactgtttgttaaatttaaaataactgaactgaact-gttgcatttcaaactgaattgaactgtttcaaaccgaactg 33186285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 54801612 - 54801686
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaa 138  Q
    ||||||||| |||||||||||| |||||||||||||||||||| ||     |||||||||||||||||||||||| ||||    
T  54801612 taggggtggacatggttcagtttgggatgaaaactgaaccgaatta-----aactgtttgctaaatttaaaataattgaa 54801686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 29630111 - 29630049
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactgttttgaa 263  Q
    |||||||||||||||||||||| | |||||||||| |||| ||| ||||||||||||||||||    
T  29630111 caaatgaaattgaattttagttcccgaactgaactgaactattctgaactgaactgttttgaa 29630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 29596887 - 29596959
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataac 134  Q
    ||||||||||||||  ||| |  |||||||||||||||||| |||||||||||||| ||||||| ||||||||    
T  29596887 gggtgggcatggtttggtttgaaatgaaaactgaaccgaaccaaactgaactgtttactaaattcaaaataac 29596959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 11750126 - 11750023
Alignment:
Q  63 ggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattg 162  Q
    |||||| |||||| || |||||| ||||||| || |||    |||||||||||||| |||||||||||||||||| |  ||| ||||||||||| |||||    
T  11750126 ggtgggtatggtttagatcgggacgaaaactaaatcgactcgaactgaactgtttgataaatttaaaataactgatcataaccatttgcatttcgaattg 11750027  T
Q  163 aact 166  Q
    ||||    
T  11750026 aact 11750023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 867626 - 867546
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    ||||||||||||| |||  |||| ||||||||| ||||||     |||| |||||||||| |||||||||||||||||||||||||    
T  867626 taggggtgggcatagtttggttccggatgaaaattgaacc-----aaaccgaactgtttggtaaatttaaaataactgaactgaac 867546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 26662137 - 26662040
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    |||| ||||||||||||||||| ||||||||||||||||| || |          | |||||||||||||||||||| ||||||||| |||||||||| |    
T  26662137 taggagtgggcatggttcagtttgggatgaaaactgaaccaaatt----------gcttgctaaatttaaaataactaaactgaactgtttgcatttcga 26662048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 33186223 - 33186189
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaact 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  33186223 caaatgaaattgaattttagttaccgaactgaact 33186189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 34607318 - 34607397
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaac 139  Q
    ||||||||| ||| ||| ||| || |||||||| ||| |||||| ||||| || ||||||||||||| |||| ||||||||    
T  34607318 taggggtggacattgtttagtccgagatgaaaattga-ccgaaccaaactaaattgtttgctaaattcaaaaaaactgaac 34607397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 40654233 - 40654265
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaa 233  Q
    |||||||||||||||||||||||| ||||||||    
T  40654233 caaatgaaattgaattttagttaccgaactgaa 40654265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 22786732 - 22786645
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  22786732 attaggggtgtgcatggttcggttcgggatgaaaactgaaccgaaccgaactgaactgtttgctaaatttaaaataattgaactgaac 22786645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 34821605 - 34821680
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaa 138  Q
    ||||||||||||||| || || ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  34821605 gggtgggcatggttcggt-cgagatgaaaactgaaccaaaccgaactgaactgtttgctaaatttaaaataactgaa 34821680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 5993536 - 5993619
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaact 140  Q
    ||||||||||| |||||||| ||| | |||||||| |||||||||||||| |||| |||| |||||||||||||||| ||||||    
T  5993536 attaggggtggacatggttcggtttgagatgaaaattgaaccgaactaaattgaattgttcgctaaatttaaaataattgaact 5993619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 44011747 - 44011829
Alignment:
Q  83 ggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaac 165  Q
    |||| ||||||||| |||||  |||||||||||||| ||||||||| |||||||||||||||| |||||||||| || |||||    
T  44011747 ggattaaaactgaatcgaaccgaactgaactgtttgataaatttaatataactgaactgaactgtttgcatttcgaactgaac 44011829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 32567090 - 32567153
Alignment:
Q  82 gggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||||||||||||||||||||||||| |||||  | |||||||||||||||||| |||||    
T  32567090 gggatgaaaactgaaccgaactaaactgaattgtttattgaatttaaaataactgaaccgaact 32567153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 85712 - 85777
Alignment:
Q  100 aactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaattgaac 165  Q
    |||| ||||||||||||||||||||||||||||| |||| |||| |||||||||||| || |||||    
T  85712 aactgaactgaactgtttgctaaatttaaaataattgaattgaaatatttgcatttcgaactgaac 85777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 8812386 - 8812463
Alignment:
Q  69 catggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaacta 146  Q
    |||||||||| |||| ||||||||| |||| ||| |||||||||| |||  ||||||||||||||||||| |||||||    
T  8812386 catggttcagatcggaatgaaaactaaaccaaacaaaactgaactatttattaaatttaaaataactgaattgaacta 8812463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 45376421 - 45376465
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaact 103  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  45376421 taggggtgggcatggttcagttcgggatgaaaactgaactgaact 45376465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 42254266 - 42254346
Alignment:
Q  67 ggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgca 152  Q
    |||||||||||||| | |||||||||| |||||||||     || ||||||  ||||||||||||||||||||| |||||||||||    
T  42254266 ggcatggttcagtttgtgatgaaaactaaaccgaact-----gagctgtttattaaatttaaaataactgaactaaactatttgca 42254346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 52247548 - 52247466
Alignment:
Q  51 gtagtgattaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaa 138  Q
    ||||||||||||  |||||||||||| ||||  |||||||| |||||||     |||||||||||||| |||||||||||||| ||||    
T  52247548 gtagtgattaggaatgggcatggttcggttcatgatgaaaagtgaaccg-----aactgaactgtttgttaaatttaaaataattgaa 52247466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 47756527 - 47756453
Alignment:
Q  70 atggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    ||||||| ||| |||||||||| ||||||||||| |||||||||  ||| ||||| ||||| |||| ||||||||    
T  47756527 atggttcggtttgggatgaaaattgaaccgaactgaactgaactacttgttaaatgtaaaacaactaaactgaac 47756453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 28283181 - 28283241
Alignment:
Q  79 ttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaac 139  Q
    |||||||||||||||||| |||  ||||||| | ||||| ||||||| |||||||||||||    
T  28283181 ttcgggatgaaaactgaatcgagttaaactggattgtttactaaattcaaaataactgaac 28283241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 47930895 - 47930942
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaa 248  Q
    |||| ||||||||||||||||||| ||||||||||  |||||||||||    
T  47930895 caaacgaaattgaattttagttaccgaactgaactggactgttccgaa 47930942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 8812528 - 8812562
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaact 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  8812528 caaatgaaattgaattttagttaccgaactgaact 8812562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 15661573 - 15661640
Alignment:
Q  63 ggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    |||||| ||||||| |||| | |||||| |||||||||||||||||      |||||||||||||||||||||    
T  15661573 ggtgggtatggttcggttcagaatgaaatctgaaccgaactaaacta-----tttgctaaatttaaaataact 15661640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 39549648 - 39549711
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaa 123  Q
    ||||||||| ||||||||  ||||| |||| ||||||||| ||| |||||||| |||||||||||    
T  39549648 taggggtggacatggttcgattcgg-atgataactgaaccaaaccaaactgaattgtttgctaaa 39549711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 5131406 - 5131302
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaaatt 161  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||  |||||||||| ||| |||||| || |    
T  5131406 gggtgggtatggttcagtttgggatgaaaactgaaccgaactgaactaaactatttgctaaatttaaaataatagaactgaactgtttacatttcgaact 5131307  T
Q  162 gaact 166  Q
    |||||    
T  5131306 gaact 5131302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 19914351 - 19914431
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactattt 149  Q
    |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  19914351 taggggtgggcatggttcagttcgggatgaaaactgaac----------tgaactgtttgctaaatttaaaataactgaactgaactattt 19914431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 22920845 - 22920923
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    ||||||||||| |||||||||||||||||||||||||     |||||||||| |||||||||||||||||||||||||||||||    
T  22920845 gggtgggcatgattcagttcgggatgaaaactgaacc-----aaactgaactatttgctaaatttaaaataactgaactgaact 22920923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 43259968 - 43259887
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    ||||||||| ||||||||||||| |||||||||||||| ||     |||||||||||||| ||||||||||||||||||||||||||    
T  43259968 taggggtggacatggttcagttcaggatgaaaactgaatcg-----aactgaactgtttgttaaatttaaaataactgaactgaact 43259887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 10476625 - 10476566
Alignment:
Q  82 gggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  10476625 gggatgaaaattgaaccgaacaaaactgaactgtttgttaaatttaaaataactgaactg 10476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 27946869 - 27946945
Alignment:
Q  69 catggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||||||| |||||||||| || ||||||  |||||||| |||||| |||||||||||||||| |||||||||    
T  27946869 catggttcagtttgggatgaaaaatgtaccgaatcaaactgaattgtttgttaaatttaaaataactaaactgaact 27946945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 34071472 - 34071392
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaa 138  Q
    |||||||||| |||||||| ||||||| |||||||| |||| ||  |||||||| |||||| |||||||||||||||||||    
T  34071472 ttaggggtggacatggttcggttcgggttgaaaactaaaccaaatcaaactgaattgtttgataaatttaaaataactgaa 34071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 29452407 - 29452330
Alignment:
Q  64 gtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    |||||||||||| |||| |||||||||| | || | ||||||| |||| |||||| ||||||||||||||||||||||    
T  29452407 gtgggcatggtttagtttgggatgaaaattaaatcaaactaaattgaaatgtttgttaaatttaaaataactgaactg 29452330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 5791776 - 5791862
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||||  |||||||| ||  ||||||||||  |||| | ||||||||||||||||| |||||||||||||||| || ||||||    
T  5791776 taggggtggatatggttcactttaggatgaaaaccaaaccaatctaaactgaactgtttgttaaatttaaaataacttaagtgaact 5791862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 19914485 - 19914543
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactgttt 259  Q
    |||||||||||||||||||||||| ||||| |||| |||| || |||||||||||||||    
T  19914485 caaatgaaattgaattttagttaccgaactaaactgaactctttcgaactgaactgttt 19914543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 3883734 - 3883808
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataa 133  Q
    |||||||||| ||||||  ||||| |||||||| ||||||   |||||||||| ||||||||||||| |||||||    
T  3883734 taggggtgggtatggtttggttcgagatgaaaattgaacctgtctaaactgaattgtttgctaaattcaaaataa 3883808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 43399355 - 43399436
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    ||||| ||| |||||||||||| | ||||||||||| ||||||| ||| ||     ||||||||||||||||||||||||| |||||    
T  43399355 tagggatggacatggttcagtttgagatgaaaactggaccgaaccaaattg-----tttgctaaatttaaaataactgaaccgaact 43399436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 6644949 - 6644865
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    |||||||| ||||| |||  ||||| |||||||| |||| || | ||||| || |||||||||||||||||||||||||| |||||    
T  6644949 taggggtgtgcatgattcgattcggaatgaaaacagaactgacc-aaactaaattgtttgctaaatttaaaataactgaattgaac 6644865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 16489133 - 16489194
Alignment:
Q  82 gggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaa 143  Q
    |||||||||||||||||||||  ||||||| | |||  |||||||||||||| |||||||||    
T  16489133 gggatgaaaactgaaccgaaccgaactgaattatttattaaatttaaaataattgaactgaa 16489194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 27514580 - 27514527
Alignment:
Q  93 tgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaacta 146  Q
    ||||||||| | |||||||||||||| ||||||| |||||| ||||||||||||    
T  27514580 tgaaccgaattgaactgaactgtttgttaaattttaaataattgaactgaacta 27514527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 27514436 - 27514402
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaact 235  Q
    |||||||||||||||||||||||| ||||||||||    
T  27514436 caaatgaaattgaattttagttaccgaactgaact 27514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 29445253 - 29445299
Alignment:
Q  207 aaattgaattttagttacagaactgaactaaactgttccgaactgaa 253  Q
    |||||||||||||||||| ||||||| |  |||||||||||||||||    
T  29445253 aaattgaattttagttactgaactgagccgaactgttccgaactgaa 29445299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 11672356 - 11672315
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaact 103  Q
    |||| |||||||||| ||||||||||||||||||| ||||||    
T  11672356 gggttggcatggttcggttcgggatgaaaactgaatcgaact 11672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 30595426 - 30595523
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttcaa 158  Q
    ||||||||||||||||||||||||||||||||| |||||          |||| |||||||||||||||||||||| |||||||| | |||||||||| |    
T  30595426 taggggtgggcatggttcagttcgggatgaaaattgaac----------tgaattgtttgctaaatttaaaataaccgaactgaattgtttgcatttcga 30595515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 42651493 - 42651389
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact-----gaactgaactatttgc 151  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||| ||| | | ||||||||||| ||||||||||||     ||||||||||||||||    
T  42651493 attaggggtgggcatggttcggtttgggatcaaaattgaaccgaaccaaattaatctgtttgctaattttaaaataactaaaccgaactgaactatttgc 42651394  T
Q  152 atttc 156  Q
    |||||    
T  42651393 atttc 42651389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 35699767 - 35699690
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactg 141  Q
    |||||||||||||||||| ||||||||||||||||||||||     ||||||| |||||| |||||||||||||| |||||||    
T  35699767 taggggtgggcatggttcggttcgggatgaaaactgaaccg-----aactgaattgtttgataaatttaaaataattgaactg 35699690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 3639943 - 3639863
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    ||||| ||||||||||||| ||| |||||||||||||||||     ||||||| |||||| |||||||||||||||||||| ||||    
T  3639943 tagggatgggcatggttcatttcaggatgaaaactgaaccg-----aactgaaatgtttgttaaatttaaaataactgaaccgaac 3639863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 18605171 - 18605256
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaac 144  Q
    ||||||||||| ||||||  |||||||| |||| |  ||||||||||||| |||| ||||||||||||||||||| | ||||||||    
T  18605171 taggggtgggcttggttcgattcgggataaaaattagaccgaactaaactaaactctttgctaaatttaaaataattaaactgaac 18605256  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 3867724 - 3867680
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaac 102  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||    
T  3867724 ttaggggtgggcatggttcggttcgggatgaaaactgaactgaac 3867680  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 11781582 - 11781658
Alignment:
Q  59 taggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    ||||||||||||| |||  ||| |||||||||||||||| ||||  ||| |||| ||||| |||||| |||||||||    
T  11781582 taggggtgggcatagtttggtttgggatgaaaactgaactgaaccgaaccgaaccgtttgttaaattcaaaataact 11781658  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 387723 - 387757
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaact 235  Q
    ||||||||||||||||||||||||| |||||||||    
T  387723 caaatgaaattgaattttagttacaaaactgaact 387757  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 30595575 - 30595617
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgtt 243  Q
    |||||||||||||||||||||||| ||| |||||| |||||||    
T  30595575 caaatgaaattgaattttagttaccgaattgaactgaactgtt 30595617  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 42326690 - 42326788
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaactgaactatttgcatttca 157  Q
    ||||||||||| ||||||| | || |||||||||| |||  ||||| |||  || ||||||||||||||||| |||   || ||||||||||||||||||    
T  42326690 ttaggggtgggtatggttcggctccggatgaaaacagaattgaacttaacataattgtttgctaaatttaaa-taat--aaatgaactatttgcatttca 42326786  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 2259758 - 2259830
Alignment:
Q  62 gggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataactgaac 139  Q
    ||||||| ||||||| ||||  ||||||||||||||||     ||||||| |||||| |||||||||||||| |||||    
T  2259758 gggtgggtatggttcggttcaagatgaaaactgaaccg-----aactgaattgtttgttaaatttaaaataattgaac 2259830  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 18605352 - 18605401
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaact 250  Q
    |||| ||||| |||||||||||||  ||||||||| ||||||||||||||    
T  18605352 caaacgaaatagaattttagttaccaaactgaactgaactgttccgaact 18605401  T

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Target: scaffold0024 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 60031 - 60104
Alignment:
Q  57 attaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaactgtttgctaaatttaaaataact 135  Q
    ||||||||||| |||||||||||||||||||||||||||| ||     |||||||||||||| ||||||||||||||||    
T  60031 attaggggtggacatggttcagttcgggatgaaaactgaatcg-----aactgaactgtttgttaaatttaaaataact 60104  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 60182 - 60232
Alignment:
Q  201 caaatgaaattgaattttagttacagaactgaactaaactgttccgaactgaactg 256  Q
    ||||| |||||||||||||||||||||||||     ||||||||||||||||||||    
T  60182 caaattaaattgaattttagttacagaactg-----aactgttccgaactgaactg 60232  T

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Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 10284 - 10229
Alignment:
Q  58 ttaggggtgggcatggttcagttcgggatgaaaactgaaccgaactaaactgaact 113  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||| ||||||||||    
T  10284 ttaggggtgggcatggttccgttccagatgaaaactgaaccaaaccaaactgaact 10229  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 20733 - 20692
Alignment:
Q  104 aaactgaactgtttgctaaatttaaaataactgaactgaact 145  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  20733 aaactgaaatgtttgctaaatttaaaataaattaactgaact 20692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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