View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_40 (Length: 294)
Name: NF19898_low_40
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 35212773 - 35213042
Alignment:
| Q |
20 |
ttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212773 |
ttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaact |
35212872 |
T |
|
| Q |
120 |
acactccactatgtataacattagaggtattagtatactattaaatcacatgaacctgatgcagcatccacaaatttcccattaatgagattctttgtgt |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35212873 |
acactccactatgcataacattagaggtattagtatactattaaatcacatgaacctgatgcagcatccataaatttcccattaatgagattctttgtgt |
35212972 |
T |
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| Q |
220 |
atcttatttccacagatggtgtgattaattcatcaacttcagcagcagtgctcaacttgcctatgcttct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
35212973 |
atcttatttccacagatggtgtgattaattcatcaacttcagcagcagtgctcaacttgcttatgtttct |
35213042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 39294041 - 39294009
Alignment:
| Q |
26 |
atcaccttcagcaacatgagcaatcacttcccc |
58 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
39294041 |
atcaccttcagcaacgtgagcaatcacttcccc |
39294009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 44000240 - 44000272
Alignment:
| Q |
26 |
atcaccttcagcaacatgagcaatcacttcccc |
58 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44000240 |
atcaccttcagcaacatgagcaatcacttcccc |
44000272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 8357685 - 8357717
Alignment:
| Q |
26 |
atcaccttcagcaacatgagcaatcacttcccc |
58 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
8357685 |
atcaccttcagcaacgtgagcaatcacttcccc |
8357717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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