View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_45 (Length: 272)
Name: NF19898_low_45
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 3640599 - 3640842
Alignment:
| Q |
21 |
ttatgcacatgcctttcatgcttaaaagtaggaaccgtccctaattcatcaagtaacatgtcatccttatttttctctttggaaaatacgttcatgactg |
120 |
Q |
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| T |
3640599 |
ttatgcacatgcctttcatgcttaaaagtagaaactgtccctaattcatcaagtaacatgtcatccttatttttctctttggaaaatacgttcatgactg |
3640698 |
T |
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| Q |
121 |
tatattcttgcaatcagtaacacaagatacataacatgaaaatacacgtactcccaaaac--acataagaaaatttgttttcttctccattttacttcct |
218 |
Q |
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| T |
3640699 |
tatattcttgcaatcggtaacacaagatacataacatgaaaatacacgtactcccaaaacagaaataagaaactttgttttcttctccattttacttcct |
3640798 |
T |
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| Q |
219 |
gaggaaaacatcatgataaaaatttgtgattcttgttgctctgt |
262 |
Q |
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| T |
3640799 |
gaggaaaacatcatgatagaaatttgtgattcttgttgctctgt |
3640842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 22462064 - 22462267
Alignment:
| Q |
3 |
attaacttctataatatattatgcacatgcctttcatgcttaaaagtaggaaccgtccctaattcatcaagtaacatgtcatccttatttttctctttgg |
102 |
Q |
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| T |
22462064 |
attaacgtctataatatattatacacatgcctttcatgtttaaaagcagaaactgccactaactcatcaagtaacttgtcatccttaattttctcttcag |
22462163 |
T |
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| Q |
103 |
aaaatacgttcatgactgtatattcttgcaatcagtaacacaagatacataacatgaaaatacacgtactcccaaaacacataagaaaatttgttttctt |
202 |
Q |
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| T |
22462164 |
ataaaatggtcatgactatatattcttgcagtcaataatacaagatacatgaaaagaaaatacacatacctcacaaagaaaaaagaaaatttgttttctt |
22462263 |
T |
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| Q |
203 |
ctcc |
206 |
Q |
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|||| |
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| T |
22462264 |
ctcc |
22462267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 17365089 - 17364935
Alignment:
| Q |
12 |
tataatatattatgcacatgcctttcatgcttaaaagtaggaaccgtccctaattcatcaagtaacatgtcatccttatttttctctttggaaaatacgt |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | | | || | |||||||||| || |||||| ||||||||| ||||| | | |
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| T |
17365089 |
tataatatattatgcacatgtctttcatgcttaaaagtaggaactgccacgaactaatcaagtaacgcgttgtccttaattttctcttcagaaaaaatgg |
17364990 |
T |
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| Q |
112 |
tcatgactgtatattcttgcaatcagtaacacaagatacataacatgaaaataca |
166 |
Q |
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| T |
17364989 |
tcatagctatatattcttgcaatcagtaacacaagatacataaaaagaaaataca |
17364935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 28831107 - 28831066
Alignment:
| Q |
14 |
taatatattatgcacatgcctttcatgcttaaaagtaggaac |
55 |
Q |
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| T |
28831107 |
taatatagtatacacatgcctttcatgcttaaaagttggaac |
28831066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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