View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_46 (Length: 272)
Name: NF19898_low_46
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 39548184 - 39548443
Alignment:
| Q |
15 |
aaaaaagagaggcacatatttgaaagaattattagtggcgcgtgcatgtatagtttataaatgaaatacattagtccaaattcatgtttatttgatgact |
114 |
Q |
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| T |
39548184 |
aaaaaagagaggcacatatttgaaagaaatattagtggtgcgtgcatgtatagtttataaatgaaatacattagtccaaattcatgtttatttgatgact |
39548283 |
T |
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| Q |
115 |
c-gaga-aaaattaattatgtatgatttattcaatattcannnnnnnaatttaaagatttatctaataaaatcttgcactgttagtctaataaaattgtc |
212 |
Q |
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| T |
39548284 |
ccgagagaaaattaattatgtatgatttatttaatattcatttttttaatttaaagatttatctaataaaatcttgcactgttagtctaataaaattgtc |
39548383 |
T |
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| Q |
213 |
tatactctatatagtgttttacctattatcacgtacacgtaggttgagaaagattgaaaa |
272 |
Q |
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| T |
39548384 |
tatactttatatagtgttttacctattatcacgtacacgtacgttgaggaagattgaaaa |
39548443 |
T |
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