View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_49 (Length: 253)

Name: NF19898_low_49
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_49
NF19898_low_49
[»] chr1 (6 HSPs)
chr1 (22-127)||(38245117-38245222)
chr1 (158-241)||(38244551-38244634)
chr1 (51-120)||(19151375-19151443)
chr1 (51-120)||(23678431-23678499)
chr1 (51-120)||(25872252-25872320)
chr1 (60-120)||(17224740-17224799)
[»] scaffold0008 (1 HSPs)
scaffold0008 (51-114)||(86738-86800)
[»] chr8 (1 HSPs)
chr8 (51-114)||(31387461-31387523)
[»] chr3 (2 HSPs)
chr3 (51-114)||(13822470-13822532)
chr3 (51-120)||(4265034-4265102)
[»] chr7 (1 HSPs)
chr7 (51-120)||(41546611-41546679)
[»] chr4 (1 HSPs)
chr4 (51-120)||(55039909-55039977)
[»] chr6 (2 HSPs)
chr6 (51-114)||(22052679-22052741)
chr6 (70-120)||(22352830-22352880)
[»] chr2 (1 HSPs)
chr2 (51-114)||(44363064-44363126)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 38245222 - 38245117
Alignment:
Q  22 tggttggagtttgatgttatgagtgattaattgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttcac 121  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||     
T  38245222 tggttggagtttgatgttatgagtgttttattaagtgataaagtttgtttgacagtctttgaagcttgagttagtctcttggtaaattcatagttttcat 38245123  T
Q  122 aatgac 127  Q
    ||||||    
T  38245122 aatgac 38245117  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 38244634 - 38244551
Alignment:
Q  158 atgactttgttagactcaatttaacttgttgattatcatgtttattgttctaacagaggtctgttttaatttgttgttagccta 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||  |||||| |||||||| |||||||    
T  38244634 atgactttgttagactcaatttaacttgttgattatgatgtttattgttctaacaaaggcttgttttgatttgttgctagccta 38244551  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 19151443 - 19151375
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||    
T  19151443 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcgtagatttca 19151375  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 23678499 - 23678431
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||    
T  23678499 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcgtagatttca 23678431  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 25872252 - 25872320
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  25872252 attgagtgataaagtttgtt-gacagtctttaaagcttggtttagtctcttggtaaattcatagatttca 25872320  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 17224740 - 17224799
Alignment:
Q  60 taaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||||||| |||||||||||||| |||| | ||||||||||||||||||||| |||||    
T  17224740 taaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcatagatttca 17224799  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 86738 - 86800
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatag 114  Q
    ||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||||||    
T  86738 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcatag 86800  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 31387461 - 31387523
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatag 114  Q
    ||||||| |||||||||||| |||||| |||||||||||| | |||||||||||||||||||||    
T  31387461 attgagtgataaagtttgtt-gacagtgtttgaagtttggtttagtctcttggtaaattcatag 31387523  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 13822532 - 13822470
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatag 114  Q
    ||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||||||    
T  13822532 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcatag 13822470  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 4265034 - 4265102
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||    
T  4265034 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcgtagatttca 4265102  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 41546611 - 41546679
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||    
T  41546611 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcgtagatttca 41546679  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 55039909 - 55039977
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||    
T  55039909 attgagtgataaagtttgtt-gacagtctttgaagcttggtttagtctcttggtaaattcgtagatttca 55039977  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 22052741 - 22052679
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatag 114  Q
    ||||||| |||||||| ||| |||||||||||||| |||  | |||||||||||||||||||||    
T  22052741 attgagtgataaagttcgtt-gacagtctttgaagcttgctttagtctcttggtaaattcatag 22052679  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 22352830 - 22352880
Alignment:
Q  70 ttgacagtctttgaagtttgggtaagtctcttggtaaattcatagttttca 120  Q
    |||||| |||| |||| |||| | |||||||||||||||||||||||||||    
T  22352830 ttgacaatcttcgaagcttggttcagtctcttggtaaattcatagttttca 22352880  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 44363126 - 44363064
Alignment:
Q  51 attgagttataaagtttgtttgacagtctttgaagtttgggtaagtctcttggtaaattcatag 114  Q
    ||||||| |||||||| ||| |||||||||||||| |||  | |||||||||||||||||||||    
T  44363126 attgagtgataaagttcgtt-gacagtctttgaagcttgctttagtctcttggtaaattcatag 44363064  T

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