View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19898_low_5 (Length: 593)
Name: NF19898_low_5
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 96 - 576
Target Start/End: Complemental strand, 41335675 - 41335195
Alignment:
| Q |
96 |
caccagtagttgaactataatcaccaatttgaaacatatttccaacaccgaaccggttcagattctgaagagatgtcatgtaattaggtctattagttgg |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335675 |
caccagtagttgaactataatcaccaatttgaaacatatttccaacaccgaaccggttcagattctgaagagatgtcatgtaattaggtctattagttgg |
41335576 |
T |
|
| Q |
196 |
gtgtgagaattcaccaagaggagttgaagttgaatggattgcacttgcacttgttgaataatctttgtcattactatttgatattggagatttggaggga |
295 |
Q |
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|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335575 |
gtgtaagaattcaccaagaggagttgaagttgaatggattgcacttgcacttgttgaataatctttgtcattactatttgatattggagatttggaggga |
41335476 |
T |
|
| Q |
296 |
gtagaagaggtgttactctttttggtctttttgcttctacgacaccctccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctac |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335475 |
gtagaagaggtgttactctttttggtctttttgcttctacgacaccctccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctac |
41335376 |
T |
|
| Q |
396 |
atgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaattttgtattggttgattcacaacgaggacacttcaaatttgtctc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
41335375 |
atgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaattttgtattggttgattcgcaacgaggacacttcaaatttgtctc |
41335276 |
T |
|
| Q |
496 |
tgaaggtggtggtaacttagcttggtgagtttgaacctgacctgtatgaacttcatgagctgcctgagcttgagcttgatc |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335275 |
tgaaggtggtggtaacttagcttggtgagtttgaacctgacctgtatgaacttcatgagctgcctgagcttgagcttgatc |
41335195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 41338680 - 41338728
Alignment:
| Q |
54 |
cacgtaaataacgtgtatatgagtgggacctcacttatccatcaccagt |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
41338680 |
cacgtaaataacgtgtatatgcgtgggacctcacttatccatcaccagt |
41338728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 3945868 - 3946007
Alignment:
| Q |
344 |
ccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagt |
443 |
Q |
| |
|
|||||||||||||||||||| | | ||| ||||||||||||||||| | || | || || || ||||||||||| ||||| | ||||||||||||| |
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|
| T |
3945868 |
ccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagt |
3945967 |
T |
|
| Q |
444 |
aacaaaattttgtattggttgattcacaacgaggacactt |
483 |
Q |
| |
|
||||||| ||||| || | ||| |||||||| |||||||| |
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|
| T |
3945968 |
aacaaaactttgtgtttgatgagtcacaacgtggacactt |
3946007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 3591904 - 3591861
Alignment:
| Q |
416 |
ggttgagacaagttatagttgttgtagtaacaaaattttgtatt |
459 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
3591904 |
ggttgagacttgttatagttgttgtagtaacaaaatttggtatt |
3591861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41338627 - 41338658
Alignment:
| Q |
1 |
tttgctttctttgcccttatttgcatcttcta |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41338627 |
tttgctttctttgcccttatttgcatcttcta |
41338658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 321 - 483
Target Start/End: Complemental strand, 23663720 - 23663558
Alignment:
| Q |
321 |
tctttttgcttctacgacaccctccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttg |
420 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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|
| T |
23663720 |
tcttgttgtttctacgacaccctccaccaactggaacatttctaagtgcaccccctcttgtccaataacgcctacatgtcttgcagaagtgacgaggttg |
23663621 |
T |
|
| Q |
421 |
agacaagttatagttgttgtagtaacaaaattttgtattggttgattcacaacgaggacactt |
483 |
Q |
| |
|
|| | | | ||||||||| |||| |||||||| || |||||||| || |||||||||||||| |
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|
| T |
23663620 |
agtgaggctgtagttgttgaagtagcaaaatttagtgttggttgaatcgcaacgaggacactt |
23663558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 7435335 - 7435191
Alignment:
| Q |
341 |
cctccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgt |
440 |
Q |
| |
|
|||||||| || || |||||||||| || || ||||||||||| || | || || |||||||| |||||||| || ||||| | | ||||||||| |
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|
| T |
7435335 |
cctccaccgactgggacatttcttagagcgccacctcttgtccagtaccttctgcaagtcttgcagaagtgtctgggctgagagagactgtagttgttga |
7435236 |
T |
|
| Q |
441 |
agtaacaaaattttgtattggttgattcacaacgaggacacttca |
485 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||| |||| |
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|
| T |
7435235 |
agtagcaaaattttgtgttggttgattcacaacgtggacatttca |
7435191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 471
Target Start/End: Original strand, 22483394 - 22483530
Alignment:
| Q |
335 |
cgacaccctccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagt |
434 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| || ||| ||| | |||||||| | |||||| | |||||| || | ||||||||| || | | || | |
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|
| T |
22483394 |
cgacaccccccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaat |
22483493 |
T |
|
| Q |
435 |
tgttgtagtaacaaaattttgtattggttgattcaca |
471 |
Q |
| |
|
||||||||||||||||||| || ||| |||| ||||| |
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|
| T |
22483494 |
tgttgtagtaacaaaatttggtgttgtttgagtcaca |
22483530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 481
Target Start/End: Complemental strand, 35202454 - 35202317
Alignment:
| Q |
344 |
ccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagt |
443 |
Q |
| |
|
|||||||||||||| ||||| | || || |||||||||||||| | |||| | ||||| |||||||||||||| || || ||||||| || |||| |
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|
| T |
35202454 |
ccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagt |
35202355 |
T |
|
| Q |
444 |
aacaaaattttgtattggttgattcacaacgaggacac |
481 |
Q |
| |
|
|||| ||||| || || | ||| |||||||| |||||| |
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|
| T |
35202354 |
aacagaatttagtgtttgatgaatcacaacgtggacac |
35202317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 456
Target Start/End: Complemental strand, 33823939 - 33823836
Alignment:
| Q |
353 |
ggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaatt |
452 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||||||||| | ||||||||||| || || | || |||| | |||||||||||||||||||||||||| |
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|
| T |
33823939 |
ggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaatt |
33823840 |
T |
|
| Q |
453 |
ttgt |
456 |
Q |
| |
|
|||| |
|
|
| T |
33823839 |
ttgt |
33823836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 33740196 - 33740250
Alignment:
| Q |
426 |
agttatagttgttgtagtaacaaaattttgtattggttgattcacaacgaggaca |
480 |
Q |
| |
|
|||| |||||||||||||||||||| || || |||||||| |||||||| ||||| |
|
|
| T |
33740196 |
agttgtagttgttgtagtaacaaaacttagtgttggttgaatcacaacgtggaca |
33740250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 5211268 - 5211317
Alignment:
| Q |
431 |
tagttgttgtagtaacaaaattttgtattggttgattcacaacgaggaca |
480 |
Q |
| |
|
|||||||||||||| || |||||||| ||| ||||||||||||| ||||| |
|
|
| T |
5211268 |
tagttgttgtagtagcagaattttgtgttgtttgattcacaacgtggaca |
5211317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 378 - 485
Target Start/End: Complemental strand, 13481118 - 13481011
Alignment:
| Q |
378 |
ttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaattttgtattggttgattcacaacgagg |
477 |
Q |
| |
|
|||||||||| | |||||||| ||||| || ||||||||||| | ||| |||||||||||||||| || |||||||| |||| ||| ||||| | || |
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|
| T |
13481118 |
ttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttgg |
13481019 |
T |
|
| Q |
478 |
acacttca |
485 |
Q |
| |
|
|||||||| |
|
|
| T |
13481018 |
acacttca |
13481011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 41895923 - 41895802
Alignment:
| Q |
344 |
ccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagt |
443 |
Q |
| |
|
||||| ||||||||||||||||| | ||| ||| |||||||| | ||||| || |||||||||| |||||||| || | | ||||||| ||||||| |
|
|
| T |
41895923 |
ccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgagaggctatagttattgtagt |
41895824 |
T |
|
| Q |
444 |
aacaaaattttgtattggttga |
465 |
Q |
| |
|
|||| |||||||| || ||||| |
|
|
| T |
41895823 |
aacagaattttgtgttagttga |
41895802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 34646065 - 34646001
Alignment:
| Q |
392 |
ctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaattttgt |
456 |
Q |
| |
|
|||||||| ||||| || | ||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
34646065 |
ctacatgttttgcagaaatatcttggttgtgtcaaactatagttgttgtagtaacaaaattttgt |
34646001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 471
Target Start/End: Original strand, 8132036 - 8132160
Alignment:
| Q |
347 |
ccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaac |
446 |
Q |
| |
|
||||||||||| |||| | |||||| ||| | ||||||||||| | ||| || |||||||| || | |||||| || | || |||||||||||||| | |
|
|
| T |
8132036 |
ccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgtagtagc |
8132135 |
T |
|
| Q |
447 |
aaaattttgtattggttgattcaca |
471 |
Q |
| |
|
| || ||||| || ||||||||||| |
|
|
| T |
8132136 |
agaactttgtgtttgttgattcaca |
8132160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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