View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_54 (Length: 249)
Name: NF19898_low_54
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 53841218 - 53841058
Alignment:
| Q |
5 |
caatttaattaattcttatgattacatagtcatttcgattaaatt-----aattcattgcttaactaatgagtgaattccaatagtttcattttgattaa |
99 |
Q |
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| T |
53841218 |
caattaaattaattcttgtgtttacatagtcatctcgattaaattctcctaattcattacttaactaattagtgaattccaatagtttcatttggattaa |
53841119 |
T |
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| Q |
100 |
attaatt-gatcaaagagggagaagcata-tagttgctttttgatttacttctcaagttgc |
158 |
Q |
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| T |
53841118 |
attaattagatcaaagagggagaaccatattagtttctttttggttttattctcaacttgc |
53841058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 53841011 - 53840973
Alignment:
| Q |
177 |
agcaacaacaaaaatttgaaaacaaaatgataaataata |
215 |
Q |
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| T |
53841011 |
agcaacaacaaaaatttgaaaacaaaatgataaataata |
53840973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 26756650 - 26756760
Alignment:
| Q |
26 |
ttacatagtcatttcgattaaattaattcattgcttaactaatgagtgaattccaatagtttcattttgattaaattaattgatcaaagagggagaagca |
125 |
Q |
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| T |
26756650 |
ttacatagtcatttagattaaattaattcattagttaactaatcagtaaattccgatagtttaattctgttttacaagagagatcaaataaggagaagca |
26756749 |
T |
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| Q |
126 |
tatagttgctt |
136 |
Q |
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| T |
26756750 |
tatagttgctt |
26756760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 42271643 - 42271711
Alignment:
| Q |
26 |
ttacatagtcatttcgattaaattaattcattgcttaactaatgagtgaattccaatagtttcattttg |
94 |
Q |
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| T |
42271643 |
ttacacagtcatttagcttaaattaattcattggttaactaatcagtaaatttcaatggtttaattttg |
42271711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 30670744 - 30670805
Alignment:
| Q |
26 |
ttacatagtcatttcgattaaattaattcattgcttaactaatgagtgaattccaatagttt |
87 |
Q |
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| T |
30670744 |
ttacgtagtcatttagattaaattaattcattagttaactaatcagtaaattccaatagttt |
30670805 |
T |
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