View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_55 (Length: 246)

Name: NF19898_low_55
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_55
NF19898_low_55
[»] chr7 (1 HSPs)
chr7 (13-227)||(44768151-44768352)
[»] chr3 (5 HSPs)
chr3 (18-107)||(10681872-10681962)
chr3 (18-109)||(8960979-8961070)
chr3 (29-107)||(10537193-10537272)
chr3 (26-109)||(3298829-3298911)
chr3 (13-55)||(36468152-36468194)
[»] chr4 (2 HSPs)
chr4 (13-109)||(9404727-9404823)
chr4 (13-109)||(1993471-1993567)
[»] chr8 (1 HSPs)
chr8 (26-109)||(44613856-44613939)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 44768151 - 44768352
Alignment:
Q  13 cacagagagaaaaatacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaacac 112  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||               
T  44768151 cacaaagagaaaaatacaaaggtgtcgtatatatgcggaacacatagcaaagttgaaacaccaaaatccgtatatatgaggaacctctg----------- 44768239  T
Q  113 accccaaaaactaaagcctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaacctgannnnnnnaaacctgcacagaacagcaa 212  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||| ||||||||||    
T  44768240 --cccaaaaactaaagcctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaaccagacccccccaaacctgcagagaacagcaa 44768337  T
Q  213 taacagctccccact 227  Q
    |||||||||||||||    
T  44768338 taacagctccccact 44768352  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 10681872 - 10681962
Alignment:
Q  18 agagaaaaatacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa 107  Q
    |||||||||||||||||||||||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||||||| | ||||||    
T  10681872 agagaaaaatacaaaggtgtcgtatatatgcggaacacctaacaaggtaggaacaccaaaaatccatatatatgaggaacctttacccaaa 10681962  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8961070 - 8960979
Alignment:
Q  18 agagaaaaatacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 109  Q
    ||||||| ||||||||||| || | ||||||||||||| || ||| || ||||||||||||||  |||||||| ||||||||| ||||||||    
T  8961070 agagaaacatacaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatctttatatatgcggaacctctacccaaaaa 8960979  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 10537193 - 10537272
Alignment:
Q  29 caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa 107  Q
    |||||||| |||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||| ||||| ||||||    
T  10537193 caaaggtgccgtatatatgcggaacacataacaaggtaggaacaccaaaaatccatatatatgaggagcctctacccaaa 10537272  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 3298911 - 3298829
Alignment:
Q  26 atacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 109  Q
    ||||||||||| || | ||||||||||||| || ||| || ||||||||||||| | |||||||| ||||||||| ||||||||    
T  3298911 atacaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaat-cttatatatgtggaacctctacccaaaaa 3298829  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 36468194 - 36468152
Alignment:
Q  13 cacagagagaaaaatacaaaggtgtcgtatatatgcggaacac 55  Q
    |||| ||||| || |||||||||||||||||||||||||||||    
T  36468194 cacaaagagataattacaaaggtgtcgtatatatgcggaacac 36468152  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 9404727 - 9404823
Alignment:
Q  13 cacagagagaaaaatacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 109  Q
    |||| ||||||| ||||||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| ||||||||    
T  9404727 cacaaagagaaacatacaaaggtgccgaaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgcggaacctctacccaaaaa 9404823  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 1993567 - 1993471
Alignment:
Q  13 cacagagagaaaaatacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 109  Q
    |||| ||| ||| ||||||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| ||||||||    
T  1993567 cacaaagaaaaacatacaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgtggaacctctacccaaaaa 1993471  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 44613939 - 44613856
Alignment:
Q  26 atacaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 109  Q
    ||||||||||| || | ||||||||||||| || ||| || |  |||||||||||| |||||||| ||||||||| ||||||||    
T  44613939 atacaaaggtgccggaaatatgcggaacacctaacaatgtagtcacaccaaaatccttatatatgtggaacctctacccaaaaa 44613856  T

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