View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_56 (Length: 246)
Name: NF19898_low_56
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23696823 - 23696589
Alignment:
| Q |
1 |
caatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaacagtttt |
100 |
Q |
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| T |
23696823 |
caatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacatccttcacagaaagagtgtgaacagtttt |
23696724 |
T |
|
| Q |
101 |
ggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggatt-ttttcaattgagaagaagattcaccttcaacaggtttgaggt |
199 |
Q |
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|||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23696723 |
ggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttcaattgagaagaagattcacattcaacaggtttgaggt |
23696624 |
T |
|
| Q |
200 |
tagtttcagtatcaacatttgcatgcaccacaggt |
234 |
Q |
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| T |
23696623 |
tagtttcagtatcaacatttgcatgcaccgcaggt |
23696589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 23701112 - 23701286
Alignment:
| Q |
4 |
tttggataaggacattttaccattgctatattctcttg--aatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaacagttttg |
101 |
Q |
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||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
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| T |
23701112 |
tttggatcaggacattttaccattgatatactctcttgtgaatttttgcagctagatatcttccaacacaatattcacagaaagagtgtgaacattttcg |
23701211 |
T |
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| Q |
102 |
gtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
176 |
Q |
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| T |
23701212 |
gttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttcaactgagaagaaga |
23701286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 23694689 - 23694517
Alignment:
| Q |
4 |
tttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaacagttttggt |
103 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||| ||||||| |
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| T |
23694689 |
tttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaagacaatcttcacagaaagaatgtgaacatttttggt |
23694590 |
T |
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| Q |
104 |
ttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
176 |
Q |
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| | ||||| |||||||| |||||||||||||| || |||||||||||||||| |||||| ||||||||||| |
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| T |
23694589 |
tctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttcaactgagaagaaga |
23694517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8149249 - 8149347
Alignment:
| Q |
1 |
caatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaacagttt |
99 |
Q |
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|||||||||| ||||||||||| ||||| | |||||||||||||| |||||||| | ||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
8149249 |
caatttggatcaggacattttattgttgcttttttctcttgaattttcacagctagaaatcttgcaacacaatcttcacagaaagagtgcgaacagttt |
8149347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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