View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_57 (Length: 245)
Name: NF19898_low_57
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 40442277 - 40442066
Alignment:
| Q |
14 |
aatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttagtttctatca |
113 |
Q |
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| T |
40442277 |
aatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttagtttctatca |
40442178 |
T |
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| Q |
114 |
tactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgag |
213 |
Q |
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| T |
40442177 |
tactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgag |
40442078 |
T |
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| Q |
214 |
tcgaggtgtttc |
225 |
Q |
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| T |
40442077 |
tcgaggtgtttc |
40442066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 18812934 - 18812859
Alignment:
| Q |
150 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttc |
225 |
Q |
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||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttc |
18812859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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