View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19898_low_58 (Length: 245)
Name: NF19898_low_58
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 47005007 - 47005204
Alignment:
| Q |
1 |
catatacactttctgcacatttgtacgtggtctttagatcgagtcaaaatctctattaaaatttggatcattgaatcttgacacggatgtaacgattgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47005007 |
catatacactttctgcacatttgtacgtggtctttagaccgagtcaaaatctctattaaaatttggatcattgaatctcgacacggatgtaacgattgga |
47005106 |
T |
|
| Q |
101 |
tgaatgtccaatttttatcggctagcaatctgatttcatattctcataaagtcgtctgtttgaaggaaccaagcaaatccacaaaaaacagtgtacat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47005107 |
tgaatgtccaatttttatcggctagcaatctgatttcatattctcataaagtcgtctgtttgaaggaaccaagcaaatccacaaaaaacagtgtacat |
47005204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 41606210 - 41606246
Alignment:
| Q |
44 |
tcaaaatctctattaaaatttggatcattgaatcttg |
80 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
41606210 |
tcaaaatctatattaaaatttggatcattaaatcttg |
41606246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University