View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_6 (Length: 548)
Name: NF19898_low_6
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 37385069 - 37385457
Alignment:
| Q |
13 |
atatgtccctcattctaaaacttaattattttttgagttgtataatcttccttggttttattactcataatggaaattggacatttgtgcagcaaatgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37385069 |
atatgtccctcattctaaaacttaattattttttgagttgtataatcttccttggttttattactcataatggaaattggacatttgtgcagcaaatgtt |
37385168 |
T |
|
| Q |
113 |
gtttcgggtgggattcgttcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaagacaccagtatatgcaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37385169 |
gtttcgggtgggattcgttcttggattgcaacggggagaaacggagaagtgtatttagctttcttcaatctaaatgaacagaagacaccagtatatgcaa |
37385268 |
T |
|
| Q |
213 |
agacatcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtggaaagaacgttgtaacaactcaagggac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37385269 |
agacatcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtacagaagtgtggagtggaaagaacgtcgtaacaactcaagggac |
37385368 |
T |
|
| Q |
313 |
gatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatattattac |
401 |
Q |
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| T |
37385369 |
gatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatattattac |
37385457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 37377661 - 37378044
Alignment:
| Q |
17 |
gtccctcattctaaaacttaattattttttgagttgtataatcttccttggttttattactcataatggaaattggacatttgtgcagcaaatgttgttt |
116 |
Q |
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| T |
37377661 |
gtcccttattttagaactgacttatttttttagttgtataatcttccttggttttattactcataatggaaatcggacatttgtgcagcaaatgtagtat |
37377760 |
T |
|
| Q |
117 |
cgggtgggattcgttcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaagacaccagtatatgcaaagac |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
37377761 |
cgggtgggattcgctcttggattgcaacggggagaaacggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtatacgcaaagac |
37377860 |
T |
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| Q |
217 |
atcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtggaaagaacgttgtaacaactcaagggacgata |
316 |
Q |
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||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
37377861 |
atcagatttggctaaggttttccctggcagaccaatcaatttctgtcaaggtaaagaagtgtggagtggaaagaacgttgcaacaacgcaagggacgata |
37377960 |
T |
|
| Q |
317 |
tcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatattattac |
401 |
Q |
| |
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| | ||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| | ||||||||||||||||| |
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| T |
37377961 |
ttcatggatttggaagttcatggatgttcactatttgttctacattgcaagtagtttggcttcaa-attattcatatattattac |
37378044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 108 - 374
Target Start/End: Complemental strand, 37408588 - 37408313
Alignment:
| Q |
108 |
atgttgtttcgggtgggattcgttcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaagacaccagtata |
207 |
Q |
| |
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|||||| ||||| ||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
37408588 |
atgttgattcggatggcattcgctcttggattgcaacgggaagaaaaggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtata |
37408489 |
T |
|
| Q |
208 |
tgcaaagacatcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtg--------gaaagaacgttgtaa |
299 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||| | || |
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| T |
37408488 |
tgcaaagacatcagatttagctaaggttttccctggcatacacatcagttcctgtcaaggtaaagaagtgtggagtggatcagtagaaagaacgtcgcaa |
37408389 |
T |
|
| Q |
300 |
caactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttct-acattgcaactagtttg |
374 |
Q |
| |
|
|||| ||||| | |||||| || || |||||||||||||| ||||||||| || |||| | ||||||| ||||||| |
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| T |
37408388 |
caacgcaaggaatgatatcagtggacgtggaagttcatggttgtgcactacttattctaatattgcaaatagtttg |
37408313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 428 - 537
Target Start/End: Original strand, 37385484 - 37385594
Alignment:
| Q |
428 |
ttttgaacctcattgttgagcnnnnnnngagatgtttgatgtggtgagatgcgtaagtgttgcatcc-accatactgtaaacgagttacgtaggtaacaa |
526 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37385484 |
ttttgaacctcattgttgagctttttttgagatgtttgatgtggtgagatgtgtaagtgttgcatcccaccatactgtaaacgagttacgtaggtaacaa |
37385583 |
T |
|
| Q |
527 |
gttgtgttcat |
537 |
Q |
| |
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||||||||||| |
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| T |
37385584 |
gttgtgttcat |
37385594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 375
Target Start/End: Original strand, 37362021 - 37362265
Alignment:
| Q |
131 |
tcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaagacaccagtatatgcaaagacatcagatttgggta |
230 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| | | |||||||||| || |
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| T |
37362021 |
tcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtcta |
37362120 |
T |
|
| Q |
231 |
aggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtggaaagaacgttgtaacaactcaagggacgatatcggttgatgtgga |
330 |
Q |
| |
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||| ||| |||||| ||||||| |||||| ||||| | ||| | |||||||||||| | |||| ||||| |||| | ||||| || |||| |
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| T |
37362121 |
aggcttttactggcaaacgcatccgttcctgtaaaggtcaggaattatggagtggaaagtatgttgcaacaaagaaaggttcaatatcaacggacgtggg |
37362220 |
T |
|
| Q |
331 |
agttcatggatgtgcactatttgttctacattgcaactagtttgg |
375 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
37362221 |
tgttcatggatgtgcactatttgttctaaattgcaagtagtttgg |
37362265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 375
Target Start/End: Complemental strand, 37366040 - 37365796
Alignment:
| Q |
131 |
tcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaagacaccagtatatgcaaagacatcagatttgggta |
230 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| | | |||| ||||| || |
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| T |
37366040 |
tcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcaaatttgtcta |
37365941 |
T |
|
| Q |
231 |
aggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtggaaagaacgttgtaacaactcaagggacgatatcggttgatgtgga |
330 |
Q |
| |
|
||| ||| |||||| ||||||| |||||| ||||| | ||| | |||||||||||| | |||| ||||| |||| | ||||| || |||| |
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|
| T |
37365940 |
aggcttttactggcaaacgcatccgttcctgtaaaggtcaggaattatggagtggaaagtatgttgcaacaaagaaaggttcaatatcaacggacgtggg |
37365841 |
T |
|
| Q |
331 |
agttcatggatgtgcactatttgttctacattgcaactagtttgg |
375 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
37365840 |
tgttcatggatgtgcactatttgttctaaattgcaagtagtttgg |
37365796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 534
Target Start/End: Original strand, 37378094 - 37378158
Alignment:
| Q |
471 |
gtgagatgcgtaagtgttgcatcc-accatactgtaaacgagttacgtaggtaacaagttgtgtt |
534 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
37378094 |
gtgaggtgcgtaagtgttgcatcccaccatgctgtatacgagttacgtaggtaacaagttgtgtt |
37378158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 98 - 370
Target Start/End: Complemental strand, 41227703 - 41227431
Alignment:
| Q |
98 |
tgtgcagcaaatgttgtttcgggtgggattcgttcttggattgcaacggggagaaatggagaagtgtatttagctttcttcaatctaaacgaacagaaga |
197 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||| |||||||||||||| || ||||| |||||||| ||| | ||||||||||||||||| |||||||||| |
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|
| T |
41227703 |
tgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacaggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaaga |
41227604 |
T |
|
| Q |
198 |
caccagtatatgcaaagacatcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtaaagaagtgtggagtggaaagaacgttgt |
297 |
Q |
| |
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||||| |||||||||| | ||| |||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
41227603 |
caccaatatatgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtgggaagaacgttgt |
41227504 |
T |
|
| Q |
298 |
aacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactag |
370 |
Q |
| |
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|||||| |||||||| ||||| | || ||||||||||||||||| || ||| |||||||| ||||||||||| |
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| T |
41227503 |
aacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaactag |
41227431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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