View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_62 (Length: 230)
Name: NF19898_low_62
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 22602235 - 22602427
Alignment:
| Q |
26 |
tatgacaaatgcttatatagtgatgtaacttttatttttatg--attgtaggagaatggtttaatgttgaccctgaagcagttataaatcaagcactgca |
123 |
Q |
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| T |
22602235 |
tatgacaaatacttatatagtaatgtaacttttattgttgtgggatttcaggagaatggtttaatgttgacccagaagcagttataaatcaagcattgca |
22602334 |
T |
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| Q |
124 |
gacaggagggggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattctacaattgttcctctaaaggtatgaaaacaag |
216 |
Q |
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| T |
22602335 |
gacaggagggggaccaaatgtttcagatgcatacaccatcaatggccttccgggaccattctacaattgttcctctaaaggtatgaaaacaag |
22602427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 21852421 - 21852494
Alignment:
| Q |
134 |
ggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattctacaattgttcctctaaaggtat |
207 |
Q |
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| T |
21852421 |
ggaccaaatgtctctgatgcatatacaatcaatggacttccaggaccattgtataattgttctgctaaaggtat |
21852494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 21204871 - 21204932
Alignment:
| Q |
134 |
ggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattctacaattgttc |
195 |
Q |
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||||||||||| || |||||||||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
21204871 |
ggaccaaatgtctctgatgcatacacaattaatggacttccagggccattgtataattgttc |
21204932 |
T |
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