View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_64 (Length: 226)
Name: NF19898_low_64
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_64 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31140468 - 31140661
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140468 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
31140567 |
T |
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| Q |
116 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140568 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
31140661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31153483 - 31153676
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31153483 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
31153582 |
T |
|
| Q |
116 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31153583 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
31153676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31103109 - 31103302
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| ||| || ||| |||| |
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| T |
31103109 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttgcctacaggattggttgttgctgtgaagaagcttcatttagtaagagat |
31103208 |
T |
|
| Q |
116 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
209 |
Q |
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|||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
31103209 |
gaagaaatgtcatttttcagttcgaagtcttttacgagtgagattgaaaccttgacaggaatcaaacacaggaatatcataaagcttcatggat |
31103302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 31058665 - 31058858
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaagctacatataataacagat |
115 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||| |
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| T |
31058665 |
caaatatctcgttggagtcggaagtcaaggaaatgtttacaaggcagagttatcagaaggtttggttgttgctgtgaagaagctacatctagtaacagat |
31058764 |
T |
|
| Q |
116 |
gaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggat |
209 |
Q |
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|||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||| |||||||||| |
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| T |
31058765 |
gaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttgacaggaattaaacataggaacatcataaaacttcatggat |
31058858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 31184192 - 31184242
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagtt |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31184192 |
caaatatctcattggagttggaagtcaaggaaatgtttataaggcagagtt |
31184242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 31184313 - 31184385
Alignment:
| Q |
140 |
aagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggatatt |
212 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||| || ||||| ||||||| |
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| T |
31184313 |
aagtcttttacgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatatt |
31184385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 16173041 - 16173092
Alignment:
| Q |
16 |
caaatatctcattggagttggaagtcaaggaaatgtttacaaggcagagtta |
67 |
Q |
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||||||||| |||||||||||| | ||||||| ||||||||| ||||||||| |
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| T |
16173041 |
caaatatcttattggagttggagggcaaggaagtgtttacaaagcagagtta |
16173092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13277 - 13352
Alignment:
| Q |
21 |
atctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaa |
96 |
Q |
| |
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|||||||||| |||||| | || |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |
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| T |
13277 |
atctcattggggttggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaa |
13352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13920 - 13995
Alignment:
| Q |
21 |
atctcattggagttggaagtcaaggaaatgtttacaaggcagagttatcttcaggtatggttgttgctgtgaagaa |
96 |
Q |
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|||||||||| |||||| | || |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |
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| T |
13920 |
atctcattggggttggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaa |
13995 |
T |
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