View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_66 (Length: 218)
Name: NF19898_low_66
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 4092500 - 4092317
Alignment:
| Q |
13 |
aatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaatatatgcacacataacataacataa |
112 |
Q |
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| T |
4092500 |
aatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaatatatgcacacataacataaca--- |
4092404 |
T |
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| Q |
113 |
caatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttat |
201 |
Q |
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| T |
4092403 |
--atgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttat |
4092317 |
T |
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