View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_low_68 (Length: 212)

Name: NF19898_low_68
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_low_68
NF19898_low_68
[»] chr3 (4 HSPs)
chr3 (1-180)||(6077859-6078034)
chr3 (26-194)||(22157705-22157878)
chr3 (1-120)||(9765868-9765983)
chr3 (155-193)||(9765992-9766030)
[»] chr6 (1 HSPs)
chr6 (70-199)||(13550186-13550315)
[»] chr7 (3 HSPs)
chr7 (26-199)||(9332760-9332937)
chr7 (1-74)||(27272975-27273048)
chr7 (48-80)||(9333980-9334012)
[»] chr8 (2 HSPs)
chr8 (48-192)||(22647851-22647995)
chr8 (1-120)||(43651527-43651642)
[»] chr5 (2 HSPs)
chr5 (48-192)||(27030060-27030204)
chr5 (1-120)||(21114736-21114851)
[»] scaffold0755 (1 HSPs)
scaffold0755 (48-192)||(5443-5584)
[»] chr2 (1 HSPs)
chr2 (5-124)||(24863544-24863658)
[»] chr4 (4 HSPs)
chr4 (129-199)||(51862210-51862280)
chr4 (26-105)||(51862135-51862214)
chr4 (129-194)||(39482310-39482375)
chr4 (26-105)||(39482371-39482450)
[»] scaffold0039 (1 HSPs)
scaffold0039 (9-190)||(81502-81675)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 6077859 - 6078034
Alignment:
Q  1 tttcatccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaata 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  6077859 tttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttcccttttatcatccatttatttt--aacaaagagaaata 6077956  T
Q  101 tacatttcatccatttgacaacaatgggtacatactttcataatacatttcttatttttaatttcgatttcagtatgaat 180  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6077957 tacatttcatccatttgacaata--gggtacatactttcataatacatttcttatttttaatttcgatttcagtatgaat 6078034  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 22157878 - 22157705
Alignment:
Q  26 catgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaat 125  Q
    ||||||||| ||||||||| | || |||||| ||||| ||||||||||||||| |||| |||||||||||||| ||||||||| | ||||| | |||||     
T  22157878 catgacaggatttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttctttcatttcagaacaaa 22157779  T
Q  126 g-----ggtacatactttcataatacatttcttatttttaatttcgatttcagtatgaatggataatttagttg 194  Q
    |     | |||||||||||||  |||| |||||| ||| |||||| |||||||||||||||||| |||||||||    
T  22157778 gagaaagatacatactttcatcttacacttcttaatttcaatttcaatttcagtatgaatggatgatttagttg 22157705  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 9765868 - 9765983
Alignment:
Q  1 tttcatccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaata 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |   ||||||||||||||| ||| ||| ||||| | |||| |||||||||||  | |    
T  9765868 tttcatccaaagatagagaggaaa-catgacagg-tttcaccgaagatctatatttcttatctcttctatgatccaatgatttcagaacaaagag--aga 9765963  T
Q  101 tacatttcatccatttgaca 120  Q
    ||||||||||||||||||||    
T  9765964 tacatttcatccatttgaca 9765983  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 9765992 - 9766030
Alignment:
Q  155 tttttaatttcgatttcagtatgaatggataatttagtt 193  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  9765992 tttttaatttcaattttagtatgaatggataatttagtt 9766030  T

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Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 13550315 - 13550186
Alignment:
Q  70 tcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaatgggtacatactttcataatacatttcttatttttaatttcgatt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||    
T  13550315 tcatccatttattttagaacaaagagaaatatacatttcatccaattgacaacaatgggtgcatactttcatcatacacttcttattttttatttcaatt 13550216  T
Q  170 tcagtatgaatggataatttagttgatgat 199  Q
    ||||||||||||||||||||||||| ||||    
T  13550215 tcagtatgaatggataatttagttggtgat 13550186  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 9332937 - 9332760
Alignment:
Q  26 catgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaat 125  Q
    ||||||||||||||||||| | || |||||| ||||| ||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| | |||||     
T  9332937 catgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaaaatacatttcttccatttcagaacaaa 9332838  T
Q  126 ggg----tacatactttcataatacatttcttatttttaatttcgatttcagtatgaatggataatttagttgatgat 199  Q
    | |    |||||||||||||  |||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9332837 gagaaaatacatactttcatcttacacttcttatttttaatttcaatttcagtatgaatggatgatttagttggtgat 9332760  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27273048 - 27272975
Alignment:
Q  1 tttcatccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatc 74  Q
    ||||||||| ||||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  27273048 tttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttttatcatc 27272975  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9334012 - 9333980
Alignment:
Q  48 tctatatttcttatcccttttatcatccattta 80  Q
    ||||||||||||||| |||||||||||||||||    
T  9334012 tctatatttcttatctcttttatcatccattta 9333980  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 22647995 - 22647851
Alignment:
Q  48 tctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaatgggtacatactttcataataca 147  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||| ||| ||||||||||||||| ||  |||||  |||||||||||||||  ||||    
T  22647995 tctatatttcttatctcttttatcatccattgatttcagaacatagataaagatacatttcatccatctggtaacaacaggtacatactttcatcttaca 22647896  T
Q  148 tttcttatttttaatttcgatttcagtatgaatggataatttagt 192  Q
     ||||||||||||||||| |||||||||||||||||| |||||||    
T  22647895 cttcttatttttaatttcaatttcagtatgaatggattatttagt 22647851  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43651642 - 43651527
Alignment:
Q  1 tttcatccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaata 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |   ||||||||||||||| ||||||| ||||| | |||| | |||||||||| |||    
T  43651642 tttcatccaaagatagagaggaaa-catgacagg-tttcaccgaagatctatatttcttatctcttttatgatccaatgatttcataacaaagagagata 43651545  T
Q  101 tacatttcatccatttgaca 120  Q
    |  |||||||| ||||||||    
T  43651544 t--atttcatctatttgaca 43651527  T

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Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 27030060 - 27030204
Alignment:
Q  48 tctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaatgggtacatactttcataataca 147  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||| ||||||||||||||| |   |||||  |||||||||||||||  ||||    
T  27030060 tctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacatttcatccatctagtaacaacaggtacatactttcatcttaca 27030159  T
Q  148 tttcttatttttaatttcgatttcagtatgaatggataatttagt 192  Q
     ||||||||||||||||| |||| ||||||||||||| |||||||    
T  27030160 cttcttatttttaatttcaattttagtatgaatggattatttagt 27030204  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21114851 - 21114736
Alignment:
Q  1 tttcatccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaata 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |   ||||||||||||||| ||||||| ||||| | |||| |||||||||||  | |    
T  21114851 tttcatccaaagatagagaggaaa-catgacagg-tttcaccgaagatctatatttcttatctcttttatgatccaatgatttcagaacaaagag--aga 21114756  T
Q  101 tacatttcatccatttgaca 120  Q
    ||||||||||| ||||||||    
T  21114755 tacatttcatctatttgaca 21114736  T

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Target: scaffold0755 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 5443 - 5584
Alignment:
Q  48 tctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttcatccatttgacaacaatgggtacatactttcataataca 147  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||| ||||||||||||||| ||  |||||  |||||||||||||||  ||||    
T  5443 tctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacatttcatccatctggtaacaacaggtacatactttcatcttaca 5542  T
Q  148 tttcttatttttaatttcgatttcagtatgaatggataatttagt 192  Q
       ||||||||||||||| |||||||||||||||||| |||||||    
T  5543 ---cttatttttaatttcaatttcagtatgaatggattatttagt 5584  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 24863658 - 24863544
Alignment:
Q  5 atccaaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatataca 104  Q
    |||||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| ||||||| ||||||| |||||||   ||||||||| |||||    
T  24863658 atccaaagatagagaggaaa-catgacagg-tttcaccaaagatctatatttcttatctcttttatgatccattgattttag---aaagagaaaaataca 24863564  T
Q  105 tttcatccatttgacaacaa 124  Q
    |||||||||||| |||||||    
T  24863563 tttcatccatttaacaacaa 24863544  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 51862210 - 51862280
Alignment:
Q  129 tacatactttcataatacatttcttatttttaatttcgatttcagtatgaatggataatttagttgatgat 199  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  51862210 tacatactttcatcttacatttcttatttttaatttcaatttcagtatgaatggatgatttagttggtgat 51862280  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 51862135 - 51862214
Alignment:
Q  26 catgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacat 105  Q
    ||||||||||||||||||| | || |||||| ||||| ||||||||||||||| |||| |||||||||||||| ||||||    
T  51862135 catgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacat 51862214  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 39482375 - 39482310
Alignment:
Q  129 tacatactttcataatacatttcttatttttaatttcgatttcagtatgaatggataatttagttg 194  Q
    |||||||||||||  |||| ||||||||||||| ||| |||||||||||||||||| |||||||||    
T  39482375 tacatactttcatcttacacttcttatttttaaattcaatttcagtatgaatggatgatttagttg 39482310  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 39482450 - 39482371
Alignment:
Q  26 catgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacat 105  Q
    ||||||||||||| ||||| | || |||||| ||||| |||||||||||||||  ||| |||||||||||||| ||||||    
T  39482450 catgacagggttttaccaaatatcaatatttattatctcttttatcatccattggtttcagaacaaagagaaagatacat 39482371  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 81502 - 81675
Alignment:
Q  9 aaagatagagaggaaagcatgacagggtttcaccaagtttctatatttcttatcccttttatcatccatttattttagaacaaagagaaatatacatttc 108  Q
    |||||||||||||| |||||| || |||||||||||   ||  ||||||||||| ||||||| ||||| | |||| |||| ||||| ||| ||||||| |    
T  81502 aaagatagagaggatagcatgtca-ggtttcaccaaagatc--tatttcttatctcttttatgatccactgatttcagaataaagaaaaagatacattcc 81598  T
Q  109 atccatttgacaacaatgggtacatactttcataatacatttcttatttttaatttcgatttcagtatgaatggataattta 190  Q
    ||||| |||  ||||     || |||||||| |  |||| || |||||||| ||||| |||| |||||||||| ||||||||    
T  81599 atccaattggtaaca-----tatatactttcgtcttacaatttttatttttgatttcaattttagtatgaatgaataattta 81675  T

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