View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19898_low_70 (Length: 201)
Name: NF19898_low_70
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_70 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 30499224 - 30499085
Alignment:
| Q |
39 |
tatgtagtcaagagccctaagtctcattacctatgtcacccaatgatatttatattattctcatgttctaaaacacttgtctataatcttttaagttcaa |
138 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30499224 |
tatgtagtcaatagcc-taagtctcgttacctatgtcacccaatgatatttatattattctcatgttctaaaacacttgtctataatcttttaagtccaa |
30499126 |
T |
|
| Q |
139 |
caacatccttcgtcatataacaaaggttgttgcctagattt |
179 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30499125 |
caacatcctacgtcatataacaaaggttgttgcctagattt |
30499085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University