View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19899_high_2 (Length: 515)
Name: NF19899_high_2
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19899_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 30737915 - 30737426
Alignment:
| Q |
1 |
ggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccata |
100 |
Q |
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| T |
30737915 |
ggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccata |
30737816 |
T |
|
| Q |
101 |
ttggaaggagtagtacctacaaattttgtagggttttttattttgaaaaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttgtgca |
200 |
Q |
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| T |
30737815 |
ttggaaggagtagtacctacaaattttgtagggttttttattttgaagaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttctgca |
30737716 |
T |
|
| Q |
201 |
tttatcaagaaggtatttcttgatgcaaatttgacacacttaaatagagtctttctctatgctgaagtggaggaatctgatatctgagtgaaggatcttc |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||| |
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| T |
30737715 |
tttatcaagaaggtatttcttgatgtaaatttgacacacttaaatagaggctttctctatgctgaagtggacgagtctgatatatgagtgaaggatcttc |
30737616 |
T |
|
| Q |
301 |
acagacatgacttattatgcttgggtcaaggcataatttaacat-gatgtatataaaacatctatgatgcttcttttgtattggaggcttccaatagatt |
399 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30737615 |
acagacatgacttattatgcttgagtcaaggcataagttaacatggatgtatataaaacatctatgatacttcttttgtattggaggcttccaatagatt |
30737516 |
T |
|
| Q |
400 |
ttgtgtccttgcttcaatgatgaattcattgcatagtgtttacatcgagagatgtaagttggctcggatgtatttaaaacattcgagaccaggcattt |
497 |
Q |
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| T |
30737515 |
tcgtgtccttgcttcaaggatgaattcattccatagtgtttac--------atgtaagttggctcggatgtatttaaaacattcgagaccaggcattt |
30737426 |
T |
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