View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19899_high_3 (Length: 462)

Name: NF19899_high_3
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19899_high_3
NF19899_high_3
[»] chr1 (4 HSPs)
chr1 (207-381)||(15374746-15374919)
chr1 (115-178)||(15373868-15373931)
chr1 (141-175)||(2129470-2129504)
chr1 (116-166)||(2129521-2129571)
[»] chr6 (5 HSPs)
chr6 (119-176)||(22536014-22536071)
chr6 (122-172)||(10041174-10041224)
chr6 (326-381)||(28299032-28299087)
chr6 (326-381)||(28512986-28513041)
chr6 (133-178)||(2961551-2961596)
[»] scaffold0642 (1 HSPs)
scaffold0642 (117-178)||(8341-8401)
[»] scaffold0345 (1 HSPs)
scaffold0345 (117-178)||(18254-18314)
[»] scaffold0105 (1 HSPs)
scaffold0105 (117-178)||(20668-20728)
[»] chr4 (1 HSPs)
chr4 (117-178)||(8194012-8194072)
[»] chr2 (2 HSPs)
chr2 (230-298)||(10928071-10928137)
chr2 (125-177)||(10928182-10928234)
[»] chr7 (2 HSPs)
chr7 (118-170)||(10024277-10024329)
chr7 (132-178)||(10024334-10024380)
[»] chr8 (1 HSPs)
chr8 (119-178)||(23842731-23842790)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 207 - 381
Target Start/End: Original strand, 15374746 - 15374919
Alignment:
Q  207 tgacgttagtgactttnnnnnnntgaactttttatgtgctatctaattcaattccttgcagaatttggtttttcatataaattaattaggtctgccaaca 306  Q
    ||||||||||||||||       ||||| ||||||||||   || ||||||||||||||| || |||||||| |||| |||||||||||||| ||||| |    
T  15374746 tgacgttagtgactttaaaaaaatgaacattttatgtgcgccctgattcaattccttgcataacttggtttt-cataaaaattaattaggtccgccaaaa 15374844  T
Q  307 aggggagggttatatcaactaggtttacaccccgaaggtgctcttgtcttctaccacctgctctgaaattttatt 381  Q
    ||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  15374845 agggcggggttatatcaattaggtttacaccccgaaggtacttttgtcttctaccacctgctctgaaattttatt 15374919  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 15373868 - 15373931
Alignment:
Q  115 ttatgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  15373868 ttatgaaaaggaacggttatgtggtaattgaaagaaaaaataataatcaaaaggaactgttata 15373931  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 2129504 - 2129470
Alignment:
Q  141 attgaaagaaaaaataataatcaaaaggaactgct 175  Q
    ||||||||||||||||||||| |||||||||||||    
T  2129504 attgaaagaaaaaataataatgaaaaggaactgct 2129470  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 2129571 - 2129521
Alignment:
Q  116 tatgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaa 166  Q
    ||||||||| ||| | |||||| ||||||||||||||||||||||| ||||    
T  2129571 tatgaaaagaaactgatatgtgataattgaaagaaaaaataataataaaaa 2129521  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 22536071 - 22536014
Alignment:
Q  119 gaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgcta 176  Q
    |||||||||  |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  22536071 gaaaaggaagtgctatgtggtaactgaaagaaaaaataataatgaaaaggaactgcta 22536014  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 10041174 - 10041224
Alignment:
Q  122 aaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaact 172  Q
    ||||||| | |||||||| ||||||||||||||||||||| ||||||||||    
T  10041174 aaggaactgttatgtggttattgaaagaaaaaataataatgaaaaggaact 10041224  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 28299032 - 28299087
Alignment:
Q  326 taggtttacaccccgaaggtgctcttgtcttctaccacctgctctgaaattttatt 381  Q
    |||||| ||||||||||| |||||   || ||||||||||||||||||||||||||    
T  28299032 taggttgacaccccgaagttgctcccatcatctaccacctgctctgaaattttatt 28299087  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 28513041 - 28512986
Alignment:
Q  326 taggtttacaccccgaaggtgctcttgtcttctaccacctgctctgaaattttatt 381  Q
    |||||| ||||||||||| |||||   || ||||||||||||||||||||||||||    
T  28513041 taggttgacaccccgaagttgctcccatcatctaccacctgctctgaaattttatt 28512986  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 2961596 - 2961551
Alignment:
Q  133 atgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    |||||||||||||| |||||||||||||  ||||||||||| ||||    
T  2961596 atgtggtaattgaatgaaaaaataataacgaaaaggaactgttata 2961551  T

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Target: scaffold0642 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 8401 - 8341
Alignment:
Q  117 atgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    ||||||| |||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  8401 atgaaaaagaaccgttatgtggtaattaaaagaaaaa-taataatgaaaaggaactgctata 8341  T

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Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 18314 - 18254
Alignment:
Q  117 atgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    ||||||| |||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  18314 atgaaaaagaaccgttatgtggtaattaaaagaaaaa-taataatgaaaaggaactgctata 18254  T

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Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 20668 - 20728
Alignment:
Q  117 atgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    ||||||| |||| | |||||||||||| |||||||| |||||||| ||||||||||||||||    
T  20668 atgaaaaagaaccgttatgtggtaattaaaagaaaa-ataataatgaaaaggaactgctata 20728  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 8194012 - 8194072
Alignment:
Q  117 atgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    ||||||| |||| | |||||||||||| |||||||| |||||||| ||||||||||||||||    
T  8194012 atgaaaaagaaccgttatgtggtaattaaaagaaaa-ataataatgaaaaggaactgctata 8194072  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 10928137 - 10928071
Alignment:
Q  230 tgaactttttatgtgctatctaattcaattccttgcagaatttggtttttcatataaattaattaggtc 298  Q
    ||||||||| |||||||| || |||||||| |||||||| |||  ||||||||| ||||||||||||||    
T  10928137 tgaacttttcatgtgctacctgattcaatttcttgcagacttt--tttttcataaaaattaattaggtc 10928071  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 10928234 - 10928182
Alignment:
Q  125 gaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctat 177  Q
    |||||| |||||| ||| |||||||||| |||||||| |||||||||||||||    
T  10928234 gaacagttatgtgataactgaaagaaaatataataatgaaaaggaactgctat 10928182  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 10024277 - 10024329
Alignment:
Q  118 tgaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaa 170  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||| ||||||||    
T  10024277 tgaaaaggaactgctatgtcgtaaccgaaagaaaaaataataataaaaaggaa 10024329  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 10024334 - 10024380
Alignment:
Q  132 tatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    |||||| |||||||||||| |||||||||| |||| |||||||||||    
T  10024334 tatgtgataattgaaagaataaataataatgaaaatgaactgctata 10024380  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 23842790 - 23842731
Alignment:
Q  119 gaaaaggaacagctatgtggtaattgaaagaaaaaataataatcaaaaggaactgctata 178  Q
    |||||||||| | |||||||||||| |||||||| || ||||| ||||||||||| ||||    
T  23842790 gaaaaggaaccgttatgtggtaattaaaagaaaatatcataataaaaaggaactgatata 23842731  T

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