View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19899_high_8 (Length: 277)
Name: NF19899_high_8
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19899_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 49808818 - 49808573
Alignment:
| Q |
16 |
tctctcgttactccatgcctatattaatcattataattatgatggttaaattaattactcgtataactttttaataaatactttgcaataattaaaattc |
115 |
Q |
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| T |
49808818 |
tctctcgttactccatgcctatattaattattataattatgatggttaaattaattactcgtataactttttaataaatactttgcaataattaaaattc |
49808719 |
T |
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| Q |
116 |
aatatcatttagtagccaccaaccataannnnnnnnnnggtagattaccaaccatatattagtgcgaggaagatggacnnnnnnnnttaaaatatacatt |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49808718 |
aatatcatttagtagccaccaaccat-tttttttttttggtagattaccaaccatatattagtgcgaggaagatggacaaaaaaaattaaaatatacatt |
49808620 |
T |
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| Q |
216 |
tacaacaaaaattataatattatatgtgattatttctcagacaaact |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49808619 |
tacaacaaaaattataatattatatgtgattatttctcagacaaact |
49808573 |
T |
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