View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19899_high_9 (Length: 263)
Name: NF19899_high_9
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19899_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 36780877 - 36780794
Alignment:
| Q |
10 |
ataggcctttggatattaaatagatggctgagattaaaatgattcatacaacaacacatgtttcttttcttactctattatttc |
93 |
Q |
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| T |
36780877 |
ataggcccttggatattaaatagatggttgagattaaaatgactcatacaacaacacatgtttctcttcttattctattatttc |
36780794 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 7565241 - 7565167
Alignment:
| Q |
163 |
tgaacccaactctccccggctcaaagccaccgtcaccaccgattcctggtcggaaaccgccgtcgccattttccg |
237 |
Q |
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| T |
7565241 |
tgaacccaactctccctggctcaaagccgccgtcgccaccgattcctggtcggaaaccgccgtcgccattttccg |
7565167 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 22980068 - 22980151
Alignment:
| Q |
10 |
ataggcctttggatattaaatagatggctgagattaaaatgattcatacaacaacacatgtttcttttcttactctattatttc |
93 |
Q |
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| T |
22980068 |
ataggcccttggatattaaatagatggttgagattaaaatgactcatacaacaacatatgtttctcttcttattctattatttc |
22980151 |
T |
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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 7565324 - 7565288
Alignment:
| Q |
10 |
ataggcctttggatattaaatagatggctgagattaa |
46 |
Q |
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| T |
7565324 |
atagacctttggatattaaatagatggctgatattaa |
7565288 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 32303851 - 32303770
Alignment:
| Q |
12 |
aggcctttggatattaaatagatggctgagattaaaatgattcatacaacaacacatgtttcttttcttactctattatttc |
93 |
Q |
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| T |
32303851 |
aggcccttggatattaaatagatggttgagattaaaaggactcatacaacaacacatgtttctcttcttattctaatatttc |
32303770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 38048393 - 38048289
Alignment:
| Q |
10 |
ataggcctttggatattaaatagatggctgagattaaaatgattcatacaacaacacatgtttcttttcttactctatta-tttcacttaatcccaacat |
108 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||| ||||| | ||||| |||| ||| |||||||||||||| ||| | |||||||||||| |
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| T |
38048393 |
ataggcccttggatattaaatagatggttgagattaaaatgactcataaagcaacaaatgtatctcttcttactctattattttttcctaatcccaacat |
38048294 |
T |
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| Q |
109 |
cacgt |
113 |
Q |
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||||| |
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| T |
38048293 |
cacgt |
38048289 |
T |
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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 9956122 - 9956205
Alignment:
| Q |
28 |
aatagatggctgagattaaaatgattcatacaacaacacatgtttcttttcttactctattatttcacttaatcccaacatcac |
111 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
9956122 |
aatagatggctgagattaaaacaactcatacaacaacacatgtttctccccttactctattatttctcataatcccaacatcac |
9956205 |
T |
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