View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19899_low_5 (Length: 409)
Name: NF19899_low_5
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19899_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 41840003 - 41839785
Alignment:
| Q |
14 |
cataggcaggacaaaatccagaggaatgaaaccaacagcaccaaccacgccattgatgtctccaaaaaacggcaacatggctgccagaaatccacagaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41840003 |
cataggcaggacaaaatccagaggaatgaaaccaacagcaccaaccacgccattgatgtctccaaaaaacggcaacatggctgccagaaatccacagaaa |
41839904 |
T |
|
| Q |
114 |
atcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatctgctgatttcttctccattatctcataag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839903 |
atcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatctgctgatttcttctccattatctcataag |
41839804 |
T |
|
| Q |
214 |
caacttgagaataaaccta |
232 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
41839803 |
caacttgagaataaaccta |
41839785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 230 - 392
Target Start/End: Complemental strand, 41838381 - 41838219
Alignment:
| Q |
230 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41838381 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
41838282 |
T |
|
| Q |
330 |
caccaactttagagtaatgaaatatctgttgtaatccttggcctctagcctaagaagcacgga |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41838281 |
caccaactttagagtaatgaaatatctgttgtaatccttggcctctagcctaagaagcacgga |
41838219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 230 - 392
Target Start/End: Complemental strand, 41832194 - 41832030
Alignment:
| Q |
230 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41832194 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
41832095 |
T |
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| Q |
330 |
caccaactttagagtaatgaaatatctgttgtaat--ccttggcctctagcctaagaagcacgga |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41832094 |
caccaactttagagtaatgaaatatctgttgtaatccccttggcctctagcctaagaagcacgga |
41832030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 41833744 - 41833598
Alignment:
| Q |
86 |
caacatggctgccagaaatccacagaaaatcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatct |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833744 |
caacatggctgccagaaatccacagaaaatcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatct |
41833645 |
T |
|
| Q |
186 |
gctgatttcttctccattatctcataagcaacttgagaataaaccta |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41833644 |
gctgatttcttctccattatctcataagcaacttgagaataaaccta |
41833598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 11651965 - 11651747
Alignment:
| Q |
14 |
cataggcaggacaaaatccagaggaatgaaaccaacagcaccaaccacgccattgatgtctccaaaaaacggcaacatggctgccagaaatccacagaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651965 |
cataggcaggacaaaatccagaggaatgaaaccaacagcaccaaccacgccattgatgtctccaaaaaacggcaacatggctgccagaaatccacagaaa |
11651866 |
T |
|
| Q |
114 |
atcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatctgctgatttcttctccattatctcataag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11651865 |
atcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatctgctgatttcttctccattatctcataag |
11651766 |
T |
|
| Q |
214 |
caacttgagaataaaccta |
232 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11651765 |
caacttgagaataaaccta |
11651747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 230 - 392
Target Start/End: Complemental strand, 11651394 - 11651230
Alignment:
| Q |
230 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11651394 |
ctagcatggacaagctaacaagtggtacattgaagcaaaagcccaagaccacaatgggagaggaaagcgcccttctgggcacgtgattatgtgggaatca |
11651295 |
T |
|
| Q |
330 |
caccaactttagagtaatgaaatatctgttgtaat--ccttggcctctagcctaagaagcacgga |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11651294 |
caccaactttagagtaatgaaatatctgttgtaatccccttggcctctagcctaagaagcacgga |
11651230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 2841635 - 2841450
Alignment:
| Q |
14 |
cataggcaggacaaaatccagaggaatgaaaccaacagcaccaaccacgccattgatgtctccaaaaaa-cggcaacatggctgccagaaatccacagaa |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2841635 |
cataggcagaacaaaatccagaggaatgaaaccaacagcaccaaccatgccattgatgtctccaaaaaaacggcaacatggctgccagaaatccacagaa |
2841536 |
T |
|
| Q |
113 |
aatcatgtaagttgttcgaagaatcaggcgaggaagaagatttcttttggaaaacatcccttgcttcacatctgctgatttcttct |
198 |
Q |
| |
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|| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||| |
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| T |
2841535 |
aaacatgtaaattgttcgaagagtcaagcgaggaagaagatttcttttggaaaacatctctggcttcacatctgccgatctcttct |
2841450 |
T |
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