View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19899_low_7 (Length: 356)

Name: NF19899_low_7
Description: NF19899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19899_low_7
NF19899_low_7
[»] chr5 (11 HSPs)
chr5 (104-249)||(1501196-1501343)
chr5 (1-70)||(1501377-1501446)
chr5 (114-169)||(38951524-38951579)
chr5 (1-70)||(25955968-25956037)
chr5 (1-70)||(38280281-38280350)
chr5 (1-59)||(7886377-7886435)
chr5 (113-160)||(38280192-38280239)
chr5 (114-160)||(25955879-25955925)
chr5 (115-156)||(7886489-7886530)
chr5 (9-70)||(42250146-42250207)
chr5 (104-160)||(42250241-42250296)
[»] chr3 (11 HSPs)
chr3 (181-252)||(13822989-13823060)
chr3 (4-70)||(47940851-47940917)
chr3 (1-70)||(8153001-8153070)
chr3 (1-70)||(49786415-49786484)
chr3 (104-162)||(49786518-49786575)
chr3 (181-232)||(4264452-4264503)
chr3 (113-160)||(8436815-8436862)
chr3 (1-70)||(8436904-8436973)
chr3 (113-149)||(47940959-47940995)
chr3 (1-69)||(48778982-48779050)
chr3 (1-30)||(29836817-29836846)
[»] chr8 (5 HSPs)
chr8 (1-70)||(3780367-3780436)
chr8 (1-70)||(4076952-4077021)
chr8 (114-160)||(3780278-3780324)
chr8 (116-160)||(4076863-4076907)
chr8 (181-232)||(31386901-31386952)
[»] chr7 (18 HSPs)
chr7 (1-70)||(496705-496774)
chr7 (4-70)||(2286483-2286549)
chr7 (4-70)||(7527272-7527338)
chr7 (183-252)||(12103200-12103269)
chr7 (1-70)||(11765729-11765798)
chr7 (1-69)||(25185942-25186010)
chr7 (104-160)||(40855070-40855125)
chr7 (113-160)||(23844768-23844815)
chr7 (115-162)||(31427168-31427215)
chr7 (181-232)||(41546047-41546098)
chr7 (115-160)||(2286593-2286638)
chr7 (113-160)||(496816-496863)
chr7 (113-160)||(11765840-11765887)
chr7 (114-160)||(42535134-42535180)
chr7 (1-43)||(42535249-42535291)
chr7 (1-70)||(48057707-48057776)
chr7 (113-160)||(7527183-7527230)
chr7 (9-70)||(23844665-23844726)
[»] chr4 (6 HSPs)
chr4 (1-70)||(52055156-52055225)
chr4 (181-233)||(14056243-14056295)
chr4 (181-232)||(55039345-55039396)
chr4 (119-160)||(49866778-49866819)
chr4 (11-70)||(1158263-1158322)
chr4 (115-160)||(52055067-52055112)
[»] chr2 (4 HSPs)
chr2 (1-70)||(11828979-11829048)
chr2 (1-70)||(13922207-13922276)
chr2 (104-160)||(11829082-11829137)
chr2 (113-160)||(13922318-13922365)
[»] chr1 (14 HSPs)
chr1 (1-70)||(20186849-20186918)
chr1 (1-70)||(30339658-30339727)
chr1 (181-233)||(25871704-25871756)
chr1 (181-232)||(19151991-19152042)
chr1 (181-232)||(23679050-23679101)
chr1 (1-43)||(9673004-9673046)
chr1 (104-162)||(20186758-20186815)
chr1 (186-251)||(38245591-38245656)
chr1 (1-70)||(51787294-51787363)
chr1 (181-233)||(17224166-17224218)
chr1 (113-160)||(9672891-9672938)
chr1 (114-160)||(51787405-51787451)
chr1 (115-160)||(30339771-30339816)
chr1 (13-70)||(43740415-43740472)
[»] chr6 (2 HSPs)
chr6 (113-160)||(33594438-33594485)
chr6 (4-70)||(33594527-33594593)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 1501343 - 1501196
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatttttgagtccttataggtataccaccataggtggc 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501343 aaatatgtggggggtgtatgtgtggtatgaaaatatgagtggtctaccaatcatttttccataatttttgagtccttataggtataccaccataggtggc 1501244  T
Q  204 aatacaccttctaccaccctta--tgtggcaatgtcattaataattaa 249  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  1501243 aatacaccttctaccacccttatgtgtggcaatgtcattaataattaa 1501196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1501446 - 1501377
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  1501446 ataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttg 1501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 38951524 - 38951579
Alignment:
Q  114 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38951524 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttcaataatt 38951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25956037 - 25955968
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  25956037 ataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 25955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38280350 - 38280281
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  38280350 ataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 38280281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7886377 - 7886435
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaacccca 59  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||||    
T  7886377 ataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatccca 7886435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 38280239 - 38280192
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  38280239 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 38280192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 25955925 - 25955879
Alignment:
Q  114 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  25955925 ggggtgtatgggtgatatgaaattatgagtggtctaccaatcatttt 25955879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 7886489 - 7886530
Alignment:
Q  115 gggtgtatgggtggtatgaaaatatgagtggtctatcaatca 156  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  7886489 gggtgtatgggtggtatgaaaatattagtggtctaccaatca 7886530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 42250146 - 42250207
Alignment:
Q  9 catacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||| ||||||||||||||||| |||||| |||||||| || || |||||| ||||||||||    
T  42250146 catagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttg 42250207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 42250241 - 42250296
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||||| || | ||||| ||||||| ||||||||||||| ||||||||||    
T  42250241 aaatatgtggggg-tgcacgggtgatatgaaattatgagtggtctaccaatcatttt 42250296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 13823060 - 13822989
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaaa 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||    
T  13823060 ataggtataccaccataggtggcaatacaccttataccacccttatgtggcaatacaattaataataaaaaa 13822989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 47940851 - 47940917
Alignment:
Q  4 ggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  47940851 ggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 47940917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8153001 - 8153070
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||||||    
T  8153001 ataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttg 8153070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49786415 - 49786484
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  49786415 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 49786484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 49786518 - 49786575
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 162  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  49786518 aaatatgtgggg-gtgtatgagtggtatgaaaatatgagtggtctaccaatcatttttc 49786575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 4264452 - 4264503
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  4264452 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 4264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 8436862 - 8436815
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  8436862 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 8436815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8436973 - 8436904
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||| ||||||||| ||||||| |||||||| ||  | || |||||| ||||||||||    
T  8436973 ataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttg 8436904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 47940959 - 47940995
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtcta 149  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47940959 gggggtgtatgggtggtatgaaattatgagtggtcta 47940995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48779050 - 48778982
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacacttt 69  Q
    ||||||||||||| || |||||| |||||||||| || |||||||| | ||| || |||||||||||||    
T  48779050 ataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacacttt 48778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29836846 - 29836817
Alignment:
Q  1 ataggtggcatacacacttaaacctccaca 30  Q
    ||||||||||||||||||||||||||||||    
T  29836846 ataggtggcatacacacttaaacctccaca 29836817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3780436 - 3780367
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||    
T  3780436 ataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttg 3780367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4077021 - 4076952
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||||    
T  4077021 ataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttg 4076952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 3780324 - 3780278
Alignment:
Q  114 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3780324 ggggtgtatgggtggtatgaaaatatgagtggtctaccaatcatttt 3780278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 4076907 - 4076863
Alignment:
Q  116 ggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  4076907 ggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 4076863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 31386901 - 31386952
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| |||||||||||||||||| ||||||| |||||| |||||||||||    
T  31386901 ataggtgtaccaccataggtggcaacacaccttataccactcttatgtggca 31386952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 496705 - 496774
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||||||    
T  496705 ataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttg 496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 2286483 - 2286549
Alignment:
Q  4 ggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  2286483 ggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 2286549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 7527338 - 7527272
Alignment:
Q  4 ggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||    
T  7527338 ggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttg 7527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 12103200 - 12103269
Alignment:
Q  183 aggtataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaaa 252  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||||| |||||    
T  12103200 aggtataccaccataggtggcaatacaccttataccacccttgtgtggcaatacaattaataataaaaaa 12103269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11765729 - 11765798
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||  |||||| ||||||||||    
T  11765729 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttg 11765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25186010 - 25185942
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacacttt 69  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||| |||||    
T  25186010 ataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatacttt 25185942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 40855125 - 40855070
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  40855125 aaatatgtggggg-tgtatgggtggtatgaaaatataagtggtctaacaatcatttt 40855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 23844768 - 23844815
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  23844768 gggggtgtataggtggtatgaaaatatgagtggtttatcaatcatttt 23844815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 31427215 - 31427168
Alignment:
Q  115 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 162  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  31427215 gggtgtttgggtggtatgaaaatatgagtggtctaccaatcatttttc 31427168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 41546047 - 41546098
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  41546047 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 41546098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 2286593 - 2286638
Alignment:
Q  115 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  2286593 gggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 2286638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 496816 - 496863
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  496816 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 496863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 11765840 - 11765887
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  11765840 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 11765887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 42535180 - 42535134
Alignment:
Q  114 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  42535180 ggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 42535134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42535291 - 42535249
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgaca 43  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  42535291 ataggtgacatacacacttaaacctccacataaacatgtgaca 42535249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48057776 - 48057707
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||| | |||||| ||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  48057776 ataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 48057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 7527230 - 7527183
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||||    
T  7527230 ggggctgtatgggtggtacgaaattatgagtggtctaccaatcatttt 7527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 23844665 - 23844726
Alignment:
Q  9 catacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||| ||| |||||||||||||| ||||||||  |||| ||| || ||||||||||    
T  23844665 catacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttg 23844726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52055225 - 52055156
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||||||||||    
T  52055225 ataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttg 52055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 14056295 - 14056243
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 233  Q
    |||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  14056295 ataggtgtaccaccataggtggcaatacaccttataccacccttgtgtggcaa 14056243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 55039345 - 55039396
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  55039345 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 55039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 49866778 - 49866819
Alignment:
Q  119 gtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  49866778 gtatggatggtatgaaaatatgagtggtctaccaatcatttt 49866819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 1158322 - 1158263
Alignment:
Q  11 tacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||| |||||| |||||||| ||||| |||| | ||||| ||||    
T  1158322 tacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttg 1158263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 52055112 - 52055067
Alignment:
Q  115 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||| || ||||||| ||||||||||||| ||||||||||    
T  52055112 gggtgtatggatgttatgaaattatgagtggtctaccaatcatttt 52055067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11828979 - 11829048
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||||||||||||||||| || ||||||||  |||| |||||| ||||||||||    
T  11828979 ataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13922207 - 13922276
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||  |||| |||||| ||||||||||    
T  13922207 ataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttg 13922276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 11829082 - 11829137
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  11829082 aaatatgtgggg-gtgtatgggtggtatgaaaatataagtggtctaccaatcatttt 11829137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 13922318 - 13922365
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  13922318 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 13922365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20186918 - 20186849
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||| | |||| ||||||||||    
T  20186918 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttg 20186849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30339658 - 30339727
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||  |||| |||||| ||||||||||    
T  30339658 ataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttg 30339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 25871704 - 25871756
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 233  Q
    |||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  25871704 ataggtgtaccaccataggtggcaatacaccttataccacccttttgtggcaa 25871756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 19152042 - 19151991
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  19152042 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 19151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 23679101 - 23679050
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 232  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  23679101 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 23679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9673046 - 9673004
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgaca 43  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  9673046 ataggtggcatacacacttaaacctccacataaacatgtgaca 9673004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 20186815 - 20186758
Alignment:
Q  104 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 162  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||    
T  20186815 aaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttttc 20186758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 38245656 - 38245591
Alignment:
Q  186 tataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaa 251  Q
    ||||||||| ||  |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||    
T  38245656 tataccaccgtacatggcaatacaccttgtaccacccttgtgtggcaatatcattaataataaaaa 38245591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51787294 - 51787363
Alignment:
Q  1 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||   ||| |||||| ||||||||||    
T  51787294 ataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttg 51787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 17224166 - 17224218
Alignment:
Q  181 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 233  Q
    |||||| |||||||||||||||||||||||||| ||||||| || ||||||||    
T  17224166 ataggtgtaccaccataggtggcaatacaccttataccacctttgtgtggcaa 17224218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 9672938 - 9672891
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  9672938 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 9672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 51787405 - 51787451
Alignment:
Q  114 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  51787405 ggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 51787451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 30339771 - 30339816
Alignment:
Q  115 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  30339771 gggtgtatgagtggtataaaaatatgagtggtctaccaatcatttt 30339816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 43740472 - 43740415
Alignment:
Q  13 cacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||| |||||| ||| |||| ||||||||| || ||||||||||    
T  43740472 cacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttg 43740415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 33594485 - 33594438
Alignment:
Q  113 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 160  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  33594485 gggggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 33594438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 33594593 - 33594527
Alignment:
Q  4 ggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 70  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||| ||||||    
T  33594593 ggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttg 33594527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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