View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1989_low_1 (Length: 337)

Name: NF1989_low_1
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1989_low_1
NF1989_low_1
[»] chr6 (3 HSPs)
chr6 (198-320)||(21917346-21917468)
chr6 (198-320)||(19238571-19238690)
chr6 (224-320)||(18239205-18239300)
[»] chr7 (3 HSPs)
chr7 (198-320)||(43119210-43119332)
chr7 (202-321)||(49013004-49013123)
chr7 (251-307)||(44820379-44820435)
[»] chr8 (4 HSPs)
chr8 (197-320)||(25105675-25105798)
chr8 (200-264)||(31678630-31678694)
chr8 (199-255)||(31678749-31678805)
chr8 (251-307)||(38700635-38700691)
[»] chr2 (5 HSPs)
chr2 (215-320)||(8442633-8442738)
chr2 (198-320)||(22311667-22311789)
chr2 (225-320)||(3960815-3960910)
chr2 (200-286)||(14952465-14952551)
chr2 (214-276)||(26674115-26674177)
[»] chr4 (8 HSPs)
chr4 (199-320)||(8019927-8020048)
chr4 (215-320)||(11777846-11777951)
chr4 (221-320)||(14122701-14122798)
chr4 (221-307)||(8019499-8019585)
chr4 (198-232)||(37339889-37339923)
chr4 (201-254)||(8019430-8019483)
chr4 (245-293)||(7593130-7593178)
chr4 (198-254)||(54566777-54566833)
[»] chr1 (4 HSPs)
chr1 (197-320)||(27580710-27580833)
chr1 (198-321)||(46033981-46034104)
chr1 (197-254)||(40339034-40339091)
chr1 (220-320)||(12802147-12802247)
[»] chr3 (3 HSPs)
chr3 (199-307)||(18391899-18392010)
chr3 (204-275)||(36881133-36881204)
chr3 (215-273)||(54697932-54697990)
[»] scaffold0155 (1 HSPs)
scaffold0155 (224-295)||(33791-33862)
[»] scaffold0236 (1 HSPs)
scaffold0236 (216-277)||(16923-16984)
[»] chr5 (4 HSPs)
chr5 (248-321)||(15069748-15069821)
chr5 (267-320)||(19911081-19911134)
chr5 (197-268)||(34822048-34822118)
chr5 (16-58)||(31694119-31694161)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 21917346 - 21917468
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgt 297  Q
    |||||||||| |||| ||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||  | | |||||||||||||||    
T  21917346 gagttgagatattctccatttcttaaaataaattgcagtttccattactatagttttgtagtaaatacatgatataaatacacatatttctagaatatgt 21917445  T
Q  298 cacattaattagacatttataca 320  Q
     ||||||||||||||||||||||    
T  21917446 gacattaattagacatttataca 21917468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 19238571 - 19238690
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgt 297  Q
    ||||||||||| ||| |||||  || |||||||| ||||||||||| |   ||||||   |||||||||||||||||||| | | ||||| | ||||| |    
T  19238571 gagttgagatcctctccattttctataataaatgacaatatccattac---agtttttgtgtaaatacatgatataaatgcacatatttccataatatat 19238667  T
Q  298 cacattaattagacatttataca 320  Q
     ||||||||| ||||||||||||    
T  19238668 gacattaattggacatttataca 19238690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 18239300 - 18239205
Alignment:
Q  224 aataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatttataca 320  Q
    |||||||| ||||||||||| ||||| |||||| |||||||||| ||||||||| |   |||| |||||||| | |||||| ||  |||||||||||    
T  18239300 aataaatgacaatatccattactatatttttgt-gtaaatacattatataaatgcacgtatttttagaatatatgacattatttgaacatttataca 18239205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 43119210 - 43119332
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgt 297  Q
    ||||||||||  ||| ||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  43119210 gagttgagattctctccattttttaaaataaatggcaacattcattactatagttttgtagtaaatacatgatataaatgcatatatttctcaaatatgt 43119309  T
Q  298 cacattaattagacatttataca 320  Q
    || ||||| |||| |||||||||    
T  43119310 catattaaatagatatttataca 43119332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 49013123 - 49013004
Alignment:
Q  202 tgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcaca 301  Q
    ||||||||||| |||||| || |||||||  |||| ||| || |||||||| |||||||||||||||||||||||  | |||||| || ||||||| |||    
T  49013123 tgagatcttctccatttcctacaataaataacaatgtccgttactatagttatgtagtaaatacatgatataaatacacacatttttataatatgtgaca 49013024  T
Q  302 ttaattagacatttatacat 321  Q
    ||||||  | ||||||||||    
T  49013023 ttaattgaatatttatacat 49013004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 44820379 - 44820435
Alignment:
Q  251 ttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaatt 307  Q
    ||||||| |||||| | |||||||||| ||| ||||||||||||| | |||||||||    
T  44820379 ttttgtaataaataaaagatataaatgcatatatttctagaatatatgacattaatt 44820435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 25105798 - 25105675
Alignment:
Q  197 tgagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatg 296  Q
    |||||||||||  ||| |||||  |||||||||||| || ||||||| ||||||||||||||||||||||  ||||||||| | | || |||||||||||    
T  25105798 tgagttgagattatctccattttctaaaataaatggtaacatccattactatagttttgtagtaaatacactatataaatgcacatatgtctagaatatg 25105699  T
Q  297 tcacattaattagacatttataca 320  Q
    | | | ||||||||||||||||||    
T  25105698 taatactaattagacatttataca 25105675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 31678630 - 31678694
Alignment:
Q  200 gttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaata 264  Q
    |||| |||| ||| |||||||||||||||||||  || |||||| ||||||||||| ||||||||    
T  31678630 gttgggatcctctccatttcttaaaataaatggacatctccattactatagttttgaagtaaata 31678694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 31678805 - 31678749
Alignment:
Q  199 agttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttg 255  Q
    |||||||||| ||| |||||||||||||||||||  || |||||||| |||||||||    
T  31678805 agttgagatcctctccatttcttaaaataaatggacatctccattgccatagttttg 31678749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 38700691 - 38700635
Alignment:
Q  251 ttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaatt 307  Q
    |||| ||||||||| |||||||||||| | | ||||||| ||||||| |||||||||    
T  38700691 ttttatagtaaatatatgatataaatgcacatatttctataatatgtgacattaatt 38700635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 8442633 - 8442738
Alignment:
Q  215 atttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatt 314  Q
    |||||||  ||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||| |  ||| |||||||||| |||||| ||| |||||    
T  8442633 atttctttgaataaatggcaattttcattactataattttgtagtaaatacatgatataaatgtacatttttttagaatatgtgacattatttaaacatt 8442732  T
Q  315 tataca 320  Q
    ||||||    
T  8442733 tataca 8442738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 22311667 - 22311789
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgt 297  Q
    ||||||||||| |||||||||  || ||||||| ||||| |||||| ||||||||||   ||||||| |||||||||||| | | |||| |||||||| |    
T  22311667 gagttgagatcctcttcatttgctacaataaattgcaatgtccattactatagttttcgtgtaaataaatgatataaatgcacatatttttagaatatat 22311766  T
Q  298 cacattaattagacatttataca 320  Q
     |||||||||| |||||||||||    
T  22311767 gacattaattatacatttataca 22311789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 3960910 - 3960815
Alignment:
Q  225 ataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatttataca 320  Q
    |||||||  ||| |||||| |||||||||||| |||||||||||||||||||| | ||||||||| ||||||| |||||||||  | |||||||||    
T  3960910 ataaatgataatgtccattactatagttttgtggtaaatacatgatataaatgcacacatttctataatatgtgacattaattgaatatttataca 3960815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 14952551 - 14952465
Alignment:
Q  200 gttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacattt 286  Q
    ||||||||| |||  ||||| ||||| |||||||| | || ||| ||| ||||||  |||||||| |||||||||||||||||||||    
T  14952551 gttgagatcctctcaatttcctaaaaaaaatggcagtctctattactagagttttcaagtaaataaatgatataaatgtatacattt 14952465  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 26674115 - 26674177
Alignment:
Q  214 catttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaat 276  Q
    |||||| |||||||||||  | | |||||| |||| |||||| ||||||||||||||||||||    
T  26674115 catttcctaaaataaatgatagtgtccattactatcgttttggagtaaatacatgatataaat 26674177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 8020048 - 8019927
Alignment:
Q  199 agttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtc 298  Q
    |||||||||| |||  ||||  |||||||||||||||| | |||| |||||||||||  |||||||||||||||||||| | | ||||||||||||| |     
T  8020048 agttgagatcctctcaattttctaaaataaatggcaatgttcattactatagttttgatgtaaatacatgatataaatgcacatatttctagaatatatg 8019949  T
Q  299 acattaattagacatttataca 320  Q
    |||||||||  | |||||||||    
T  8019948 acattaattgaatatttataca 8019927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 11777846 - 11777951
Alignment:
Q  215 atttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatt 314  Q
    |||| ||| |||||||| |||| ||| || |||||||||||  |||||||||| ||||||||| ||  |||  |||||||| | ||||||||||||||||    
T  11777846 atttattacaataaatgacaatgtcctttactatagttttggcgtaaatacataatataaatggatgtattattagaatatatgacattaattagacatt 11777945  T
Q  315 tataca 320  Q
    ||||||    
T  11777946 tataca 11777951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 14122701 - 14122798
Alignment:
Q  221 taaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatttataca 320  Q
    |||||||||||||||| |||||| || || |||| ||||||||||||||||||||  ||  ||||| || |||| || |||||||||| ||| |||||||    
T  14122701 taaaataaatggcaatttccattactctacttttatagtaaatacatgatataaa--tactcatttttaaaatacgtgacattaattaaacacttataca 14122798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 8019585 - 8019499
Alignment:
Q  221 taaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaatt 307  Q
    |||| ||||||||||| | |||| |||||||||||  ||||||||||||| ||||||   | ||||||||||||| | |||||||||    
T  8019585 taaattaaatggcaatgttcattactatagttttgatgtaaatacatgatgtaaatgctcatatttctagaatatatgacattaatt 8019499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 37339923 - 37339889
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatgg 232  Q
    ||||||||||| |||||||||||||||||||||||    
T  37339923 gagttgagatcatcttcatttcttaaaataaatgg 37339889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 8019430 - 8019483
Alignment:
Q  201 ttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagtttt 254  Q
    |||||||| ||| |||||| || ||||||| |||||||||||| ||||||||||    
T  8019430 ttgagatcctctccatttcctataataaatagcaatatccattactatagtttt 8019483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 7593178 - 7593130
Alignment:
Q  245 ctatagttttgtagtaaatacatgatataaatgtatacatttctagaat 293  Q
    ||||||||||| |||||||| |||||||||||| | ||||||| |||||    
T  7593178 ctatagttttgaagtaaatatatgatataaatgcacacatttcaagaat 7593130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 54566777 - 54566833
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagtttt 254  Q
    ||||| ||||| |||  ||||||||||||||||| |||||||||||  |||||||||    
T  54566777 gagttaagatcatctatatttcttaaaataaatgacaatatccattaatatagtttt 54566833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 27580833 - 27580710
Alignment:
Q  197 tgagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatg 296  Q
    |||||||||||| |||| ||||  ||||||||||| |||| || ||| ||||| ||||||| ||||||||| ||||||||  | | |||| |||||||||    
T  27580833 tgagttgagatcctctttattttctaaaataaatgacaatgtctattactataattttgtaataaatacataatataaatacacatatttttagaatatg 27580734  T
Q  297 tcacattaattagacatttataca 320  Q
    | |||||| || ||||||||||||    
T  27580733 tgacattatttggacatttataca 27580710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 46033981 - 46034104
Alignment:
Q  198 gagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgt 297  Q
    ||||||||||| |||| ||||  || ||||||||  ||||||||||  |||||||| |  |||||||||||||||||||| |   ||||||||||||| |    
T  46033981 gagttgagatcctctttatttgctataataaatgataatatccattattatagtttcgatgtaaatacatgatataaatgcacctatttctagaatatat 46034080  T
Q  298 cacattaattagacatttatacat 321  Q
     | |||||||| ||||||||||||    
T  46034081 gatattaattaaacatttatacat 46034104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 40339034 - 40339091
Alignment:
Q  197 tgagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagtttt 254  Q
    |||||| ||||| | || ||||||||||||||||| |||||||||||  |||||||||    
T  40339034 tgagttaagatcctttttatttcttaaaataaatgtcaatatccattattatagtttt 40339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 12802247 - 12802147
Alignment:
Q  220 ttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatttatac 319  Q
    |||||| ||||||  || ||||||  |||||||||| | |||||| |  ||||||||| | | ||||||| ||| ||  |||||||||||||||||||||    
T  12802247 ttaaaagaaatggacatttccattaatatagttttgaattaaataaaaaatataaatgcacatatttctaaaatttgagacattaattagacatttatac 12802148  T
Q  320 a 320  Q
    |    
T  12802147 a 12802147  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 18392010 - 18391899
Alignment:
Q  199 agttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaataca---tgatataaatgtatacatttctagaatat 295  Q
    |||||||||  ||| |||||| || |||||||||||| | ||||| ||||||||||||||||||||||   | ||||||| | | ||||||||| |||||    
T  18392010 agttgagattctctccatttcctataataaatggcaaaacccattactatagttttgtagtaaatacatagtaatataaacgcacacatttctataatat 18391911  T
Q  296 gtcacattaatt 307  Q
    || |||||||||    
T  18391910 gtgacattaatt 18391899  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 36881204 - 36881133
Alignment:
Q  204 agatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaa 275  Q
    ||||| ||| |||||||||||  |||||| ||| ||| || ||||||||||| |||||||| ||||||||||    
T  36881204 agatcctctccatttcttaaataaaatggaaatgtcccttactatagttttgaagtaaataaatgatataaa 36881133  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 54697990 - 54697932
Alignment:
Q  215 atttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatata 273  Q
    |||| |||| |||||| | ||||||| || |||||||||||||||||||| ||||||||    
T  54697990 attttttaagataaattgaaatatccgttactatagttttgtagtaaatatatgatata 54697932  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 33791 - 33862
Alignment:
Q  224 aataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatgtatacatttctagaatat 295  Q
    ||||||||||||| |||||| |||||||||||   ||||||||| ||||||||| | | |||||||||||||    
T  33791 aataaatggcaatgtccattactatagttttggtataaatacataatataaatgcacatatttctagaatat 33862  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 16923 - 16984
Alignment:
Q  216 tttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatgatataaatg 277  Q
    |||| |||||||||||||||| | ||||  |||||||||||||||||| ||| |||||||||    
T  16923 tttcctaaaataaatggcaatgttcatttgtatagttttgtagtaaatgcatcatataaatg 16984  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 15069748 - 15069821
Alignment:
Q  248 tagttttgtagtaaatacatgatataaatgtatacatttctagaatatgtcacattaattagacatttatacat 321  Q
    ||||||||||||||||||||||||||||| ||||  ||| || ||||| ||  |||| ||||| ||||||||||    
T  15069748 tagttttgtagtaaatacatgatataaatatatatgtttttaaaatatatcttattagttagatatttatacat 15069821  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 19911134 - 19911081
Alignment:
Q  267 tgatataaatgtatacatttctagaatatgtcacattaattagacatttataca 320  Q
    ||||||||||| ||| ||||||||||||| | |||||||||| |||||||||||    
T  19911134 tgatataaatgcataaatttctagaatatatgacattaattaaacatttataca 19911081  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 34822118 - 34822048
Alignment:
Q  197 tgagttgagatcttcttcatttcttaaaataaatggcaatatccattgctatagttttgtagtaaatacatg 268  Q
    |||||||| ||  ||| |||||| ||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  34822118 tgagttgaaattctctccatttcctaaaataaatg-caatttctattactatagttttgtagtaaatacatg 34822048  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 31694119 - 31694161
Alignment:
Q  16 tggtgcactaaaactcccgcatacgtaaggtctgtgaaggagt 58  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  31694119 tggtgcactaaatctcccgcatacgcaaggtctgggaaggagt 31694161  T

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