View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1989_low_2 (Length: 311)
Name: NF1989_low_2
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1989_low_2 |
 | |
|
| [»] chr3 (25 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 6244929 - 6245240
Alignment:
| Q |
3 |
atggacatcatcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaat |
102 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6244929 |
atggacaagatcatgcatgatgaaattgtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagatcattgaagaat |
6245028 |
T |
|
| Q |
103 |
ttattacccaactcttcattaa---tggctattccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgg |
199 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6245029 |
ttattacccaactcttcttcatctttggctattccctttatcaaaccttctgccatccaaagtttgattaatccatccttttcaaactcataacccttgg |
6245128 |
T |
|
| Q |
200 |
gaaatatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgttctcacccttgggtaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||| ||||||||| || | |||| || ||||| |
|
|
| T |
6245129 |
gaaatatagaacaataagcaaaacaatgcttcagattggaagggaggttaaggtaactcattcttagaacggaataaatgttgctgtcactctcaggtaa |
6245228 |
T |
|
| Q |
300 |
acgccacaaatc |
311 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6245229 |
acgccacaaatc |
6245240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 6258847 - 6259152
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6258847 |
atcatgcatgatgaaatagtacttaccagcccagaatggcataatcgctgatggttggaaaaaagacattgacactagatcattgaagaatttattaccc |
6258946 |
T |
|
| Q |
112 |
aactcttcat---taatggctattccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatag |
208 |
Q |
| |
|
|||||||| | | ||| |||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6258947 |
aactcttcttcttttttggttattccctttagcaaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatag |
6259046 |
T |
|
| Q |
209 |
aacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaa---tgctgttctcacccttgggtaaacgcca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6259047 |
aacaataagcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcaaagcggaataaatgttgctgttgtcacccttgggtaaacgcca |
6259146 |
T |
|
| Q |
306 |
caaatc |
311 |
Q |
| |
|
|||||| |
|
|
| T |
6259147 |
caaatc |
6259152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 13270946 - 13270662
Alignment:
| Q |
3 |
atggacatcatcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaat |
102 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
13270946 |
atggacaagatcatgcatgatgaaatagtacttaccagcccagaatggcacaattgctgattgttggaaaaacgaaattgacactagatcattgaagaat |
13270847 |
T |
|
| Q |
103 |
ttattacccaactcttc---attaatggctattccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgg |
199 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13270846 |
ttattacccaactcttcttcatttttggctattccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgg |
13270747 |
T |
|
| Q |
200 |
gaaatatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgtt |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
13270746 |
gaaatatagaacaatatgcaaaacaatgcttcagattggaaggtaggctaaggtaactcattctcagaatggaaaaaatgctgtt |
13270662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 6168536 - 6168844
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| ||||||| |
|
|
| T |
6168536 |
atcatgcatgatgaaatagtacttaccagcccataatggcataattgctgattgttggaaaaatgacattgacactagatgatcaaagaattcattaccc |
6168635 |
T |
|
| Q |
112 |
aactcttc---attaatggctattcc------ctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
|||||||| ||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6168636 |
aactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaacttataacccttgggaa |
6168735 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgttctcacccttgggtaaacg |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||| | || ||||||||||| | |||| ||| ||||||| |
|
|
| T |
6168736 |
atatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaactctgtcttagaaaggaataaatgcttctgtcactcttaggtaaact |
6168835 |
T |
|
| Q |
303 |
ccacaaatc |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
6168836 |
ccacaaatc |
6168844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 6591737 - 6591475
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||||||||| | || ||| |||||||| ||||||||| || ||||||||||||||||||| ||||||||||| | ||||||||||| ||| ||| |
|
|
| T |
6591737 |
atcatgcatgatgaagtagtgcttgccagcccataatggcatagttactgattgttggaaaaacgatattgacactagatgattgaagaattcattgccc |
6591638 |
T |
|
| Q |
112 |
aact---cttca--ttaatggctattcc----ctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
|||| ||||| || || || | || ||||||||| |||| |||||||||||||||||||||| || |||| ||||||||||| |||||||||| |
|
|
| T |
6591637 |
aacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6591538 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctca |
265 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||| ||||| |
|
|
| T |
6591537 |
atatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctca |
6591475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 6899733 - 6899989
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||| ||||||||||||| |||||| |||||||| | ||||||||||| || |||||||||| ||||||| |
|
|
| T |
6899733 |
atcatgcatgatgaagtagtatttaccagcccataatggcataattgttgattgctggaaaaatgttattgacactagatcgttgaagaattcattaccc |
6899832 |
T |
|
| Q |
112 |
aactcttcattaat---ggctattcc------ctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
|||||||| | | | | || |||| ||| |||||||||| |||||||||||||||||||| | || |||| ||||||||||| ||||| |||| |
|
|
| T |
6899833 |
aactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaactcatagccctttggaa |
6899932 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactca |
259 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6899933 |
ataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactca |
6899989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 7749653 - 7749909
Alignment:
| Q |
18 |
catgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattacccaact-- |
115 |
Q |
| |
|
||||||||| | ||| ||||||||||| || |||||| || ||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
7749653 |
catgatgaagtagtatttaccagcccataaaggcatagttactgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgt |
7749752 |
T |
|
| Q |
116 |
-cttcattaatggctattccc------tttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatag |
208 |
Q |
| |
|
||||| | || || ||||| |||||||| |||| ||||||||||||||||||||| ||| ||| ||||||||||| ||||| |||||||||| |
|
|
| T |
7749753 |
tcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaactcatagccctttggaaatatag |
7749852 |
T |
|
| Q |
209 |
aacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctca |
265 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||| |
|
|
| T |
7749853 |
aacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctca |
7749909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 6141931 - 6142239
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||| |||| | ||||||||||| ||| |||||||||||| |||||||||||||||| || ||||||||||| | || |||||||| |||||| |
|
|
| T |
6141931 |
atcatgcatagtgaagtagtacttaccagaccataatggcataattactgattgttggaaaaatgatattgacactagataatcgaagaattcattacct |
6142030 |
T |
|
| Q |
112 |
aactcttc-at--taatggctattccc------tttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
|||||||| || || || | | || || | ||||||| |||||||||||||||||||||| || |||| ||||||||||| |||||||||| |
|
|
| T |
6142031 |
aactcttctatgctactgtcaactctgaaatggttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaa |
6142130 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgttctcacccttgggtaaacg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||| |||| | ||||||| |||||||| |
|
|
| T |
6142131 |
atatagaacaataagcaaaacaatgcttcagatcagaagggaggctaaggtaactgattctcagaacggaattaatgtttccgtcaccctctggtaaacg |
6142230 |
T |
|
| Q |
303 |
ccacaaatc |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
6142231 |
ccacaaatc |
6142239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 6916782 - 6917008
Alignment:
| Q |
48 |
tggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattacccaactcttcattaat---ggctattcc------cttt |
138 |
Q |
| |
|
|||||||||| ||||| |||||||||| || ||||||||||| |||||||| |||| ||||||||||||||| | | | | || |||| ||| |
|
|
| T |
6916782 |
tggcataattactgatcgttggaaaaatgatattgacactagatcattgaaaaattcattacccaactcttcttcacttttgtctcttccacaacacttc |
6916881 |
T |
|
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6916882 |
agcaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatggaacagtaagcaaaacaatgcttcagatttg |
6916981 |
T |
|
| Q |
239 |
aagggaggctaaggtaactcattctca |
265 |
Q |
| |
|
||| ||| |||||||||||||||||| |
|
|
| T |
6916982 |
aagagagattaaggtaactcattctca |
6917008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 6882149 - 6882457
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
||||||||||| ||| | ||| || ||||||| |||||||||||| |||||||||||||||| || |||||||| | | ||||||||||| |||||| |
|
|
| T |
6882149 |
atcatgcatgacgaagtagtatttgtcagcccataatggcataattactgattgttggaaaaaagatattgacaccaaatgattgaagaattcattacct |
6882248 |
T |
|
| Q |
112 |
aactcttcat---taatggctatt------ccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
||||||| | | || || || | ||| | |||||||| |||||||||||| || |||| | || |||| |||| |||||| |||||||||| |
|
|
| T |
6882249 |
aactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagcccttgggaa |
6882348 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgttctcacccttgggtaaacg |
302 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| | | | | |||| | | ||||||| ||||||||| |
|
|
| T |
6882349 |
atatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctcagtaacaagttaatgtagatttcaccctcgggtaaacg |
6882448 |
T |
|
| Q |
303 |
ccacaaatc |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
6882449 |
ccacaaatc |
6882457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 311
Target Start/End: Original strand, 6265469 - 6265644
Alignment:
| Q |
136 |
tttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagat |
235 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||| || ||| |||||||||||||||||||||| |||| ||| ||||||||||| ||||||||| |
|
|
| T |
6265469 |
tttaacaaaccttctgccatccaaagcctgattaattcaccctcctcaaactcataacccttgggaagattagaccaacaagcaaaacaacgcttcagat |
6265568 |
T |
|
| Q |
236 |
tgtaagggaggctaaggtaactcattctcaaaaccgaataaatgctgttctcacccttgggtaaacgccacaaatc |
311 |
Q |
| |
|
|| |||||||||||||||| ||| |||| | | ||| ||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
6265569 |
tgggagggaggctaaggtaatgcatcctcagagcaaaattaatgcagttgtcaccctcgggtaaacaccacaaatc |
6265644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 8569219 - 8569094
Alignment:
| Q |
141 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaa |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||||||| || |||||||| ||||||||| |||| |||||| || |
|
|
| T |
8569219 |
caaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaa |
8569120 |
T |
|
| Q |
241 |
gggaggctaaggtaactcattctcaa |
266 |
Q |
| |
|
||||| || ||||||||| |||||| |
|
|
| T |
8569119 |
gggagattatggtaactcaatctcaa |
8569094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 7587628 - 7587755
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||| |||||| | ||||||||| |||| |||||| |
|
|
| T |
7587628 |
agcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatacataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattgg |
7587727 |
T |
|
| Q |
239 |
aagggaggctaaggtaactcattctcaa |
266 |
Q |
| |
|
| ||||| || ||||||||| |||||| |
|
|
| T |
7587728 |
atgggagattatggtaactcaatctcaa |
7587755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 8471317 - 8471444
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||| | ||||||||| ||||||| ||||||||||| || || |||||||| |||||||||| |
|
|
| T |
8471317 |
agcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattag |
8471416 |
T |
|
| Q |
239 |
aagggaggctaaggtaactcattctcaa |
266 |
Q |
| |
|
|||||||| || ||||||||| |||||| |
|
|
| T |
8471417 |
aagggaggttatggtaactcaatctcaa |
8471444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 6520436 - 6520311
Alignment:
| Q |
141 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaa |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||| |||| ||| | ||||||||||||||| ||||||||||| ||||||||| |||| |||||| || |
|
|
| T |
6520436 |
caaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataacccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaa |
6520337 |
T |
|
| Q |
241 |
gggaggctaaggtaactcattctcaa |
266 |
Q |
| |
|
||||| || ||||||||| |||||| |
|
|
| T |
6520336 |
gggagattatggtaactcaatctcaa |
6520311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 6722328 - 6722222
Alignment:
| Q |
153 |
catccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaagggaggctaagg |
252 |
Q |
| |
|
|||||||||||| |||| | || ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| | |
|
|
| T |
6722328 |
catccaaagcttaattagttcactcttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaag |
6722229 |
T |
|
| Q |
253 |
taactca |
259 |
Q |
| |
|
|||||| |
|
|
| T |
6722228 |
aaactca |
6722222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 6839180 - 6839047
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||| | ||||||||| ||||| | ||||||| |||||| || |||||||| | |||| | || |
|
|
| T |
6839180 |
agcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactgg |
6839081 |
T |
|
| Q |
239 |
aagggaggctaaggtaactcattctcaaaaccga |
272 |
Q |
| |
|
|||||||| || ||||||||| ||||||| |||| |
|
|
| T |
6839080 |
aagggaggttatggtaactcaatctcaaagccga |
6839047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 8589485 - 8589588
Alignment:
| Q |
142 |
aaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaag |
241 |
Q |
| |
|
||||||| ||||||||| |||||||| ||| || | |||||||| ||||||||||||||||| || |||||||||| ||| |||||||| ||| || ||| |
|
|
| T |
8589485 |
aaaccttctgccatccagagcttgatcaattcacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaag |
8589584 |
T |
|
| Q |
242 |
ggag |
245 |
Q |
| |
|
|||| |
|
|
| T |
8589585 |
ggag |
8589588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 6947024 - 6947125
Alignment:
| Q |
141 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaa |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||||| || || ||||| ||||||||| ||||| ||||| || |
|
|
| T |
6947024 |
caaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaa |
6947123 |
T |
|
| Q |
241 |
gg |
242 |
Q |
| |
|
|| |
|
|
| T |
6947124 |
gg |
6947125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 6265336 - 6265443
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
|||||||||||| || | | ||||||| | ||| |||||||| | | |||||||||||||||| |||||||||||||| | || |||||||| ||| || |
|
|
| T |
6265336 |
atcatgcatgataaagtagcacttaccggtccataatggcatcaatactgattgttggaaaaatgacattgacactagttgatcgaagaattcattccct |
6265435 |
T |
|
| Q |
112 |
aactcttc |
119 |
Q |
| |
|
|||||||| |
|
|
| T |
6265436 |
aactcttc |
6265443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 6554714 - 6554618
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagat |
235 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| | || |||||||| ||| |||||||| || || |||||||| ||||| ||| |||| |||| |
|
|
| T |
6554714 |
agcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatagcccttggggaaaatggaacaatacgcaaagcaacgctttagat |
6554618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 6735743 - 6735839
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagat |
235 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| | || |||| ||| |||||||||||| || || |||||||| ||||| ||| |||| |||| |
|
|
| T |
6735743 |
agcaaaccttctgccatccaaagcttgatcaatacttcttttttaaatctataacccttggggaaaatggaacaataggcaaagcaacgctttagat |
6735839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 8454409 - 8454533
Alignment:
| Q |
141 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaa |
240 |
Q |
| |
|
|||||||| ||||||||||||| |||| | | |||| |||| ||| | || |||||||||||| || |||||||| | ||| ||| |||| ||||| || |
|
|
| T |
8454409 |
caaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatgacccttgggaaaaatggaacaataggaaaagcaacgctttagattagaa |
8454508 |
T |
|
| Q |
241 |
gggaggctaaggtaactcattctca |
265 |
Q |
| |
|
||||| || ||||||||| ||||| |
|
|
| T |
8454509 |
gggagattatggtaactcaatctca |
8454533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 6480256 - 6480197
Alignment:
| Q |
141 |
caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttggg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
6480256 |
caaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttggg |
6480197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 6449058 - 6448937
Alignment:
| Q |
144 |
accttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgtaaggg |
243 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||||||||| ||| ||||||||| || || || || ||||| ||||| ||| ||| ||| || ||||| |
|
|
| T |
6449058 |
accttctgccatccaaagcttgatcaattcatcctttttaaatctataacccttagggaaaatggagcaataggcaaagcaacactttagactggaaggg |
6448959 |
T |
|
| Q |
244 |
aggctaaggtaactcattctca |
265 |
Q |
| |
|
|| || ||||||||| ||||| |
|
|
| T |
6448958 |
agattatggtaactcaatctca |
6448937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 35140756 - 35140445
Alignment:
| Q |
12 |
atcatgcatgatgaaatggtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagctcattgaagaatttattaccc |
111 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35140756 |
atcatgcacgatgaaatagcacttaccagcccagaatggcagaattgctgatttttggaaaaacgacattgacactagatcattgaagaatttattaccc |
35140657 |
T |
|
| Q |
112 |
aactcttc---attaatggctatt------ccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaa |
202 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35140656 |
aactcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaa |
35140557 |
T |
|
| Q |
203 |
atatagaacaataagcaaaacaatgcttcagattgtaagggaggctaaggtaactcattctcaaaaccgaataa---atgctgttctcacccttgggtaa |
299 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| | |||||||||||||| |
|
|
| T |
35140556 |
atatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaa |
35140457 |
T |
|
| Q |
300 |
acgccacaaatc |
311 |
Q |
| |
|
||||| |||||| |
|
|
| T |
35140456 |
acgccgcaaatc |
35140445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 6573571 - 6573438
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| |||| |||||||| | |||||||||||||||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
6573571 |
agcaaaccttcagccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaatatgcaaaacaacgctttagattgg |
6573472 |
T |
|
| Q |
239 |
aagggaggctaaggtaactcattctcaaaaccga |
272 |
Q |
| |
|
||||||| || | ||||||| |||||| ||||| |
|
|
| T |
6573471 |
aagggagattatgataactcaatctcaataccga |
6573438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 25242409 - 25242289
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgt |
238 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||| || |||| ||| ||||||| || |||||||| ||||| ||| ||||||| ||||||||||| |
|
|
| T |
25242409 |
agcaagccttatgctatccaaagcttgattaattcacccttgcaaaaagcataacctttaggaaatatggaacagtaactaaaacaacgcttcagattgg |
25242310 |
T |
|
| Q |
239 |
aagggaggctaaggtaactca |
259 |
Q |
| |
|
||||||| || ||||||||| |
|
|
| T |
25242309 |
aagggagattatggtaactca |
25242289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 7753 - 7677
Alignment:
| Q |
139 |
agcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaata |
215 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||| | || |||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
7753 |
agcaaaccttctcccatccaaagcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaata |
7677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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