View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1989_low_3 (Length: 232)
Name: NF1989_low_3
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1989_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 36359562 - 36359358
Alignment:
| Q |
18 |
aattggatatacttgttaattaactaactttatttttataggctctaacatttgatagttgcaaggacttaatagttgaggatttgacaatacaaaatgc |
117 |
Q |
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| T |
36359562 |
aattggatatacttgttaattaactaaatttatttttgtaggctctaacatttgatagttgcaaggacttaatagttgaggatttgacaatacaaaatgc |
36359463 |
T |
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| Q |
118 |
acaacaaatccacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaatagtcctaacaccgacggaattcat |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36359462 |
gcaacaaattcacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaatagtcctaacaccgacggaattcat |
36359363 |
T |
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| Q |
218 |
ctcac |
222 |
Q |
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|||| |
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| T |
36359362 |
atcac |
36359358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 36348274 - 36348078
Alignment:
| Q |
26 |
atacttgttaattaactaactttatttttataggctctaacatttgatagttgcaaggacttaatagttgaggatttgacaatacaaaatgcacaacaaa |
125 |
Q |
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|||| |||||||||||||||||| ||||| |||||||| || |||| || |||| ||||||| ||||||||| |||||| |||| |||||| ||||||| |
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| T |
36348274 |
atacgtgttaattaactaactttgtttttgtaggctctgacgtttgctaattgcgaggacttgatagttgagaatttgaagatacgaaatgcgcaacaaa |
36348175 |
T |
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| Q |
126 |
tccacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaatagtcctaacaccgacggaattcatctcac |
222 |
Q |
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|||| ||||||| |||||||| |||||||| |||||||||||| | ||| ||||||| | | |||||||||||||||| ||||||||| |||| |
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| T |
36348174 |
tccatatttcatttcaggattcagttaatgttacagcttctggtctgattgtggcatcaccggaggatagtcctaacaccgatggaattcatgtcac |
36348078 |
T |
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