View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1989_low_4 (Length: 232)
Name: NF1989_low_4
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1989_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 32724389 - 32724595
Alignment:
| Q |
11 |
catcatcaagtacgccacatcgcgaggtattatttgctttgagtgtaagccattcacagttttatcctttataaaaggaacctcttagagtgaggagtgc |
110 |
Q |
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|||| |||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32724389 |
catcctcaagtacgccacatcgcgaggtattgttcgctttgagtgtaagcccttcacagttttatcctttataaaaggaacctcttagagtgagaagtgc |
32724488 |
T |
|
| Q |
111 |
cgatgttgtatatatattacccttaacctcaattcgcaagcaatatggaactttatggtgtattgcaacaaaactaattcttgctccacttcttacaatt |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32724489 |
cgatgttgtatataaattacccttaacctcaattcgcaagcaatatggaactttacgatgtattgcaacaaaactaattcttgctccacttcttacaatt |
32724588 |
T |
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| Q |
211 |
tagcatg |
217 |
Q |
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||||||| |
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| T |
32724589 |
tagcatg |
32724595 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 29534427 - 29534373
Alignment:
| Q |
34 |
gaggtattatttgctttgagtgtaagccattcacagttttatcctttataaaagg |
88 |
Q |
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|||||||| | ||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
29534427 |
gaggtattgtctgctttgggtgtaagccatttgcagttttatcctttataaaagg |
29534373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 32989207 - 32989250
Alignment:
| Q |
45 |
tgctttgagtgtaagccattcacagttttatcctttataaaagg |
88 |
Q |
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||||||||||||| ||| ||||||||||| |||||||||||||| |
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| T |
32989207 |
tgctttgagtgtatgcccttcacagttttgtcctttataaaagg |
32989250 |
T |
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