View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1989_low_5 (Length: 230)
Name: NF1989_low_5
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1989_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1770144 - 1769919
Alignment:
| Q |
1 |
catttatggctagtcaaatttgctggcttgtacttttcattttcaattttaaaaccaaaa---tcttatccttaactctacttcccttgtattaataaag |
97 |
Q |
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| T |
1770144 |
catttatggccagtcaaatttgctggcttgtacttttcattttcaattttaaaaccaaaaaaatcttatccttaactctacttcccttgtattaataaag |
1770045 |
T |
|
| Q |
98 |
ac--cacccacctttggattctatactatctcttccattttcaaatctcgtgtaagaaaaatataatgaacctcttcctcaccaccacccttctcatcct |
195 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1770044 |
acttcacccacctttggattctatactatctcttccattttcaaatctcgtgtaagaaaaatataatgaacctcttcctcaccaccacccttctcatcct |
1769945 |
T |
|
| Q |
196 |
agttactatctccaccaccttactac |
221 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1769944 |
agttactatctccaccaccttactac |
1769919 |
T |
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