View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1989_low_8 (Length: 201)

Name: NF1989_low_8
Description: NF1989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1989_low_8
NF1989_low_8
[»] chr3 (19 HSPs)
chr3 (1-183)||(13271812-13271994)
chr3 (1-182)||(6140875-6141056)
chr3 (4-173)||(6264280-6264449)
chr3 (1-182)||(6257791-6257972)
chr3 (1-168)||(6236328-6236495)
chr3 (1-183)||(6898676-6898858)
chr3 (15-182)||(6243906-6244073)
chr3 (1-183)||(6915689-6915871)
chr3 (1-183)||(6723338-6723520)
chr3 (1-180)||(6850539-6850717)
chr3 (1-138)||(6167524-6167661)
chr3 (1-182)||(6592612-6592793)
chr3 (7-183)||(7748590-7748766)
chr3 (1-181)||(6881106-6881286)
chr3 (33-155)||(5262399-5262521)
chr3 (33-154)||(5279276-5279397)
chr3 (43-182)||(5297334-5297473)
chr3 (33-113)||(5248814-5248894)
chr3 (28-113)||(4390224-4390309)
[»] scaffold1643 (1 HSPs)
scaffold1643 (33-116)||(825-908)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 13271812 - 13271994
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  13271812 tagtatctcttgaattgttgggatgtaaactctgttcccagttgccaccacttgggcagttgccttctctcgagaagctttccatttctggctgtcatgg 13271911  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgagc 183  Q
    | ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||| ||||||    
T  13271912 aatagagatcattggttcagagttttgcggctataatccatcaaatgttccatttagatcccttgaaactttgcgggttgagc 13271994  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 6141056 - 6140875
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6141056 tagtatctcttgaattgttgggatgtacacactgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 6140957  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgag 182  Q
    | |||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| ||||||| |||||    
T  6140956 aatagagatcattggttcagagttttgcagctataattcatcaaatgttgcatttagatcccttgaaactttgcgggttgag 6140875  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 6264449 - 6264280
Alignment:
Q  4 tatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagt 103  Q
    ||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6264449 tatctcttgaattgttgggatgtacacactgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagt 6264350  T
Q  104 agagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttg 173  Q
    ||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| ||||    
T  6264349 agagatcattggttcagagttttgccgctataattcagcaaatgttccatttagatcccttgaaactttg 6264280  T

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Target: chr3; HSP #4
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 6257972 - 6257791
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    ||||||||||||||||  |||||| | |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6257972 tagtatctcttgaattagtgggatgtaaacattgttcccagttgccaccacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatgg 6257873  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgag 182  Q
    | || |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||| |||||    
T  6257872 aataaagatcattggttcagagttttgcggctataattcatcaaatgttgcatttagatcccttgaaactttgcgggttgag 6257791  T

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Target: chr3; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 6236495 - 6236328
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| | ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  6236495 tagtatctcttgaattgttgggatgtaaatattgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatatcaggatgtcatgg 6236396  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaa 168  Q
    | ||  | ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  6236395 aataacgttcattggttcagagttttgcggctataattcatcaaatgttccatttagatcccttgaaa 6236328  T

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Target: chr3; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6898858 - 6898676
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||| ||||||||||||| | ||||  ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  6898858 tagtatctctagaattgttgggatgtaaacttcgttcccagttgcccccacttgggcagttaccctctctcaagaagctttccatttcaggctgtgatgg 6898759  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgagc 183  Q
    | |||| ||||||||| ||||| |||| ||||||||||||||||||  |||||||||||||||||||| |||||| |||||||    
T  6898758 aatagatatcattggtacagagatttgtggctacaattcatcaaatgatccatttagatcccttgaaactttgcgatttgagc 6898676  T

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Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 6244073 - 6243906
Alignment:
Q  15 ttgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattg 114  Q
    |||||||||| | ||||||||||| ||||||||| | ||  ||||||||| |||||||||||||||||||||||||||||||||||| |||  |||||||    
T  6244073 ttgttgggatgtaaactctgttccaagttgccacaaattaagcagttcccatctctcaagaagctttccatttcaggctgtcatggaataggtatcattg 6243974  T
Q  115 gttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgag 182  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6243973 gttcagagttttgccgctataattcatcaaattttacatttagatcccttgaaactttgcggtttgag 6243906  T

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Target: chr3; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6915871 - 6915689
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||| ||||    
T  6915871 tagtatctcttgaattgttgggatgtaaactccgttcccagttgccgccacttgggcagttcccctctctcaagaagctttttatttcaggctgtgatgg 6915772  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgagc 183  Q
    | |||| ||||||||| ||||||| |  |||||||||||||||||| || |||||| ||||||||||| |||||| |||||||    
T  6915771 aatagaaatcattggtacagagttctatggctacaattcatcaaatgtttcatttaaatcccttgaaactttgcgatttgagc 6915689  T

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Target: chr3; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 6723338 - 6723520
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||    
T  6723338 tagtatctcttgaattgttgggatgtaaattctgttcccagttaccaccacttgggcagttcccctttctcgagaagctttccatttcaggctgtgatgg 6723437  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgagc 183  Q
    | |||||| ||||||  |||||||||||||||| ||| | |||| | |||||||||||||||||| || |||||| |||||||    
T  6723438 aatagagaccattggaacagagttttgcggctataatgcttcaagtgttccatttagatcccttgtaactttgcgatttgagc 6723520  T

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Target: chr3; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 6850539 - 6850717
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    ||||||||||||| |||||||||| | ||| |  ||||||||| ||| ||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  6850539 tagtatctcttga-ttgttgggatgtaaacaccattcccagtttccatcacttgggctgttcccctctctcaagaatctttccatttcaggctgtgatgg 6850637  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttg 180  Q
    | |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||    
T  6850638 aatagagatcattggtccagagttttacggctacaattcatcaaatgttccatttaaatcccttgaaactttgcgatttg 6850717  T

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Target: chr3; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6167661 - 6167524
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  6167661 tagtatctcttgaattgtttggatgtaaacactgttcccagttgccaccacttgggcagttccattctctcaagaagctttccatttccggctgtcatgg 6167562  T
Q  101 agtagagatcattggttcagagttttgcggctacaatt 138  Q
    | |||||| ||||||||||||||||| |||||| ||||    
T  6167561 aatagagaacattggttcagagtttttcggctataatt 6167524  T

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Target: chr3; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 6592612 - 6592793
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    ||||||| |||||||||||||||| | || ||  |||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  6592612 tagtatcccttgaattgttgggatgtaaattccattccgaattgccaccacttgggcagttcccctctctcaagaagctttccttttcaggctgtgatgg 6592711  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgag 182  Q
    | |||||||||||||| |||| |||| |||||| |||||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  6592712 aatagagatcattggtacagaattttacggctataattcatcaaatgttccatttagattccttgaaacattgcgatttgag 6592793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 7748766 - 7748590
Alignment:
Q  7 ctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtaga 106  Q
    |||||||||||||||||| | |||| ||||||||||| ||| |||||||||||||||  |||||||||||||||||||||||||||||  ||||| ||||    
T  7748766 ctcttgaattgttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaataga 7748667  T
Q  107 gatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttgagc 183  Q
    ||| |||||| ||||| |||| ||||| |||||||||||| || |||||||||| ||||||| |||||| |||||||    
T  7748666 gattattggtgcagagatttgtggctataattcatcaaatgtttcatttagatctcttgaaactttgcgatttgagc 7748590  T

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Target: chr3; HSP #14
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6881286 - 6881106
Alignment:
Q  1 tagtatctcttgaattgttgggatttgaactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatgg 100  Q
    |||||||||||||||||||||||| | || ||  ||||||||||||||| ||||||||||| || ||||||||||||  |||||||||| ||||| ||||    
T  6881286 tagtatctcttgaattgttgggatgtaaaatccattcccagttgccaccgcttgggcagtttccctctctcaagaagtgttccatttcaagctgtgatgg 6881187  T
Q  101 agtagagatcattggttcagagttttgcggctacaattcatcaaattttccatttagatcccttgaaattttgcggtttga 181  Q
    | |||| || |||||| ||||||||  |||||| ||||||||| || ||||||||||||||||||||| |||||| |||||    
T  6881186 aatagaaattattggtacagagtttctcggctataattcatcagatgttccatttagatcccttgaaactttgcgatttga 6881106  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 5262521 - 5262399
Alignment:
Q  33 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggttcagagttttgcggct 132  Q
    ||||||| |||||||||||||||| || | || ||||| ||  ||||||| |||||||  ||| ||||| |||||||||| |||  ||||||||  ||||    
T  5262521 tgttcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggct 5262422  T
Q  133 acaattcatcaaattttccattt 155  Q
    | |||||||||| | ||||||||    
T  5262421 ataattcatcaactgttccattt 5262399  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 5279397 - 5279276
Alignment:
Q  33 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggttcagagttttgcggct 132  Q
    |||| |||||| ||||||||||||||| | || ||||| ||| ||||||| |||||||  ||| ||||| ||||||| || |||  ||||||||  ||||    
T  5279397 tgtttccagtttccaccacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagttttatggct 5279298  T
Q  133 acaattcatcaaattttccatt 154  Q
    | |||||||||| | |||||||    
T  5279297 ataattcatcaactgttccatt 5279276  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 5297473 - 5297334
Alignment:
Q  43 tgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggttcagagttttgcggctacaattcatc 142  Q
    ||||||||||||||||| ||   ||||||||  | ||||| ||||||||||| |||||| |||||| ||||||   |||||||| |||  |||| |||||    
T  5297473 tgccaccacttgggcagctctgctctctcaaagaactttcaatttcaggctgccatggaatagagagcattggcaaagagttttacggaaacaactcatc 5297374  T
Q  143 aaattttccatttagatcccttgaaattttgcggtttgag 182  Q
    |||| || | || || ||||| | ||||||||| ||||||    
T  5297373 aaatgttgcgttcaggtccctcgcaattttgcgatttgag 5297334  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 5248894 - 5248814
Alignment:
Q  33 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcatt 113  Q
    |||||||| ||||||||| ||| |  ||| || | ||||||||||||||  |||||||| ||||||||| |||||||||||    
T  5248894 tgttcccatttgccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 5248814  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 4390224 - 4390309
Alignment:
Q  28 aactctgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcatt 113  Q
    |||| |||||||||||||||||| ||| | |||| || | |||||| || ||||  |||||| |||||| |||| |||||||||||    
T  4390224 aactttgttcccagttgccaccatttgagaagtttccctatctcaataatctttgtatttcaagctgtcctggaatagagatcatt 4390309  T

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Target: scaffold1643 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 908 - 825
Alignment:
Q  33 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggt 116  Q
    |||||||| || ||||||||||||||| | |||||||||||||| ||||| ||||||   ||| ||||| || |||||||||||    
T  908 tgttcccattttccaccacttgggcagcttccttctctcaagaatctttctatttcatattgtgatggaataaagatcattggt 825  T

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