View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_high_2 (Length: 408)
Name: NF19901_high_2
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 6915870 - 6915476
Alignment:
| Q |
1 |
aatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatct |
100 |
Q |
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| T |
6915870 |
aatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatct |
6915771 |
T |
|
| Q |
101 |
tttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatg |
200 |
Q |
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| T |
6915770 |
tttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatg |
6915671 |
T |
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| Q |
201 |
cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaat |
300 |
Q |
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| T |
6915670 |
cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaat |
6915571 |
T |
|
| Q |
301 |
tttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgct |
395 |
Q |
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| T |
6915570 |
tttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgct |
6915476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
88 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
187 |
Q |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
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| Q |
188 |
gtatc |
192 |
Q |
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||||| |
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| T |
15040341 |
gtatc |
15040345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
11 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
84 |
Q |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
| Q |
197 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
252 |
Q |
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| T |
15041840 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
| Q |
302 |
ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt |
364 |
Q |
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| T |
15043792 |
ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
39 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
108 |
Q |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
39 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
108 |
Q |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
| Q |
168 |
taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc |
246 |
Q |
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| T |
35856932 |
taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc |
35856854 |
T |
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