View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_1 (Length: 476)
Name: NF19901_low_1
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 47192223 - 47191779
Alignment:
| Q |
16 |
tgtttcacttttggatgaaactaaggttgctcgctcattaatttcttggccaggaagaagagtatctgttggaaaatcaaagctttgccaaaggatacta |
115 |
Q |
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| T |
47192223 |
tgtttcacttttggatgaaactaaggttgctcgctcattaatttcttggccaggaagaagagtatctgttggaaaatcaaagctttgccaaaggatacta |
47192124 |
T |
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| Q |
116 |
atgttaccgttggtcgtggagagaacgaggttgccattgttttgaagcttgagctgtaatggaaaaggagaaaaggatgaagtggaccaaattggtgttc |
215 |
Q |
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| T |
47192123 |
atgttaccgttggtcgtggagagaacgaggttgccattgttttgaagcttgagctgtaatggaaaaggagaaaaggatgaagtggaccaaattggtgttc |
47192024 |
T |
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| Q |
216 |
tttttctgtctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaac |
315 |
Q |
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| T |
47192023 |
tttttctgtctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaac |
47191924 |
T |
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| Q |
316 |
aatggtgggttgtttggattttgtgaagtagacggcgaaacaaaaggcgttatctccgacagggaggaaaccggctgagaaatcgccgttggatgaaatg |
415 |
Q |
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| T |
47191923 |
aatggtgggttgtttggattttgtgaagtagacggcgaaacaaaaggcgttatctccgacggggaggaaaccggcggagaaatcgccgttggatgaaatg |
47191824 |
T |
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| Q |
416 |
agggtgttatttgatttttcaactgaaagagatgagccttgtggg |
460 |
Q |
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| T |
47191823 |
agggtgttatttgatttttcaactgaaagagatgagccttgtggg |
47191779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 26745712 - 26745804
Alignment:
| Q |
225 |
ctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaacaa |
317 |
Q |
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| T |
26745712 |
ctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaa |
26745804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 26693303 - 26693264
Alignment:
| Q |
66 |
caggaagaagagtatctgttggaaaatcaaagctttgcca |
105 |
Q |
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| T |
26693303 |
caggaaggagggtatctgttggaaaatcaaagctttgcca |
26693264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 26677092 - 26677184
Alignment:
| Q |
225 |
ctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaacaa |
317 |
Q |
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| T |
26677092 |
ctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaa |
26677184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 317
Target Start/End: Complemental strand, 26688998 - 26688906
Alignment:
| Q |
225 |
ctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaacaa |
317 |
Q |
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| T |
26688998 |
ctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaa |
26688906 |
T |
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