View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_3 (Length: 298)
Name: NF19901_low_3
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 6916135 - 6915848
Alignment:
| Q |
1 |
aattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccata |
100 |
Q |
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| T |
6916135 |
aattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccata |
6916036 |
T |
|
| Q |
101 |
ttgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagca |
200 |
Q |
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| T |
6916035 |
ttgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagca |
6915936 |
T |
|
| Q |
201 |
tcaaccccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
288 |
Q |
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| T |
6915935 |
tcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
84 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
183 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
184 |
gctttccaactgtagcatcaacc |
206 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15038357 - 15038438
Alignment:
| Q |
1 |
aattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatata |
82 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
15038357 |
aatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctgacccagcagggagtggttcaatata |
15038438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
220 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
274 |
Q |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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