View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_4 (Length: 274)
Name: NF19901_low_4
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 38877751 - 38878002
Alignment:
| Q |
1 |
aacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacact |
100 |
Q |
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| T |
38877751 |
aacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaaattaaacact |
38877850 |
T |
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| Q |
101 |
ttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgatttaacaattctgcccctggaatttc |
200 |
Q |
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| T |
38877851 |
ttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatctctggcatttgatttaacaattctgcccctggaatttc |
38877950 |
T |
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| Q |
201 |
atcattcaaacggaccacctctttaataccaccaactccttgactcagtgct |
252 |
Q |
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| T |
38877951 |
atcattcaaacggaccacctctttaataccaccaactccttgactcagtgct |
38878002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 16792911 - 16793109
Alignment:
| Q |
4 |
aaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacacttta |
103 |
Q |
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| T |
16792911 |
aaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatttaaatacttta |
16793010 |
T |
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| Q |
104 |
gtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgatttaacaattctgcccctggaatttcat |
202 |
Q |
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| T |
16793011 |
gtggcaagacttcgccttcgagaacaataaaggtcggtaatcctacttcacgaacaatctctggcatttgatataacaatttttcctctggtatttcat |
16793109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 16617274 - 16617415
Alignment:
| Q |
1 |
aacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacact |
100 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| |||||||| | ||||||| |
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| T |
16617274 |
aacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaatatcaaatgtaattgaaacact |
16617373 |
T |
|
| Q |
101 |
ttagtgacaggtccacaccttcgggaatagtaaaggttggta |
142 |
Q |
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| T |
16617374 |
tcagtggtgagaccccaccttccggactagtaaaggttggta |
16617415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 16629612 - 16629739
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacactttagtgacaggtcc |
114 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| |||||||||||| |||| || | ||||||||||||| | | | |
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| T |
16629612 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16629711 |
T |
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| Q |
115 |
acaccttcgggaatagtaaaggttggta |
142 |
Q |
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| T |
16629712 |
ccaccttcgggactaataaaggttggta |
16629739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 16638493 - 16638620
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacactttagtgacaggtcc |
114 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| |||||||||||| |||| || | ||||||||||||| | | | |
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| T |
16638493 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16638592 |
T |
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| Q |
115 |
acaccttcgggaatagtaaaggttggta |
142 |
Q |
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| T |
16638593 |
ccaccttcgggactaataaaggttggta |
16638620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 16790996 - 16791147
Alignment:
| Q |
1 |
aacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaattaaacact |
100 |
Q |
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|||||||||| ||||||||||| ||||||||| | |||| ||| ||||||| |||||||| ||||| ||||||||||| |||||||| ||||| ||| |
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| T |
16790996 |
aacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaatttaaatact |
16791095 |
T |
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| Q |
101 |
ttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttc |
152 |
Q |
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| T |
16791096 |
ttagtggcaagacttcaccttcaagaacaataaaggtcagtagtcctagttc |
16791147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 16628995 - 16629085
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaatatgaaatgtaaattaaacactttag |
104 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |||||| | ||||||| ||| |||||||| ||||||| | ||||||||||| |
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| T |
16628995 |
gcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaatgtagttcaaacactttag |
16629085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 16629304 - 16629378
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta |
89 |
Q |
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| T |
16629304 |
gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta |
16629378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 16637876 - 16637966
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaatatgaaatgtaaattaaacactttag |
104 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||| |||||| | ||||||| ||| |||||||| ||||||| | ||||||||||| |
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| T |
16637876 |
gcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaatgtagttcaaacactttag |
16637966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 16638185 - 16638259
Alignment:
| Q |
15 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta |
89 |
Q |
| |
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|||| ||||||||||||||| |||||||| ||||||| |||||||| || ||| |||||||||||| ||||||| |
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| T |
16638185 |
gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta |
16638259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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