View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_5 (Length: 270)
Name: NF19901_low_5
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 10614403 - 10614161
Alignment:
| Q |
17 |
actcatcagtctatgcatgataattgcctaagtaatagtttaatatttttatataatgtacagtgtaatgctaaaattgttaaatggtggcgccatggtg |
116 |
Q |
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| T |
10614403 |
actcatcagtctatgcatgataattgcctaagtaatagtttaatatttttatataatgtacagtgtaatgctaaaattgttaaatggtggcgccatggtg |
10614304 |
T |
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| Q |
117 |
gaatggcggatttttaacaacagccataggcaatttgtgaaggaatatcggtgcccaccattatggcgccataggccgcaatggtgtgtatacgcggtgt |
216 |
Q |
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| T |
10614303 |
gaatggcggatttttaacaacagccataggcaatttgtgaaggaatgtcggtgcccaccattgtggcgccataggccgcaatggtgtgtatacgcggtgt |
10614204 |
T |
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| Q |
217 |
cagtagtaaacaaaacaaaaaagcattttatctgctgcatatt |
259 |
Q |
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| T |
10614203 |
cagtagtaaacaaaacaaaaaagcattttatctgctgcatatt |
10614161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 6415778 - 6415663
Alignment:
| Q |
17 |
actcatcagtctatgcatgataattgcct-aagtaatagtttaatatttttatataatgtacagtgtaatgctaaaattgttaaatggtggcgccatggt |
115 |
Q |
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|||||| ||||| || ||||||||| || ||||||||||||||||| | |||||| || |||||||||||||| | ||||||||| ||||||| ||||| |
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| T |
6415778 |
actcattagtctgtgtatgataattctctgaagtaatagtttaatatctgtatatagtgaacagtgtaatgctatagttgttaaattgtggcgcaatggt |
6415679 |
T |
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| Q |
116 |
ggaatggcggattttt |
131 |
Q |
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| T |
6415678 |
ggaatgccggattttt |
6415663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 51764761 - 51764832
Alignment:
| Q |
17 |
actcatcagtctatgcatgataattgcctaagtaatagtttaatatttttatataatgtacagtgtaatgctaa |
90 |
Q |
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||||||||||||||| ||||||||| || |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
51764761 |
actcatcagtctatggatgataattccccaagtaa--gtgtaatatttttatataatgtacagtgtaatgctaa |
51764832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 28766187 - 28766232
Alignment:
| Q |
118 |
aatggcggattttta-acaacagccataggcaatttgtgaaggaat |
162 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
28766187 |
aatggcggatttttggacaaccgccataggcaatttgtgaaggaat |
28766232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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