View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_6 (Length: 258)
Name: NF19901_low_6
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 4487945 - 4487706
Alignment:
| Q |
19 |
atgatgtgttcaatcacagaggagctctcaaataagtttataattagcaattcggaatatttaacaacattcgctaaatgcaactttttgagaataaata |
118 |
Q |
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| T |
4487945 |
atgatgtgttcaatcacagaggagctctcaaataagtttataattagcaatttggaatatttaataacttgcactaaatgcaactttttgagaataaata |
4487846 |
T |
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| Q |
119 |
tgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaa |
218 |
Q |
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| T |
4487845 |
tgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaa |
4487746 |
T |
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| Q |
219 |
agattgccgtatgtggattttacagtgccatatgtagaat |
258 |
Q |
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| T |
4487745 |
aggttgccgtatgtggattttacagtgccatatgcagaat |
4487706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 130 - 258
Target Start/End: Complemental strand, 4482855 - 4482727
Alignment:
| Q |
130 |
tattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgta |
229 |
Q |
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| T |
4482855 |
tattgattgggactttttgtttatgtttggttaaacaatgatggaagacttacgacgcttttgttggggacacggccataatagaggaaagattgaggta |
4482756 |
T |
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| Q |
230 |
tgtggattttacagtgccatatgtagaat |
258 |
Q |
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| T |
4482755 |
tgtggattttacattgccatatgcagaat |
4482727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 34606351 - 34606428
Alignment:
| Q |
175 |
agacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatg |
252 |
Q |
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| T |
34606351 |
agacttatgacggtgttgttggcgacatgaccatactggcagagagattgcaatatgtagattttactgtgccatatg |
34606428 |
T |
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