View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19901_low_7 (Length: 243)
Name: NF19901_low_7
Description: NF19901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19901_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39082150 - 39082377
Alignment:
| Q |
1 |
tctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatac |
100 |
Q |
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| T |
39082150 |
tctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatac |
39082249 |
T |
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| Q |
101 |
acattcatcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatata |
200 |
Q |
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| T |
39082250 |
acattcatcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatata |
39082349 |
T |
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| Q |
201 |
tggtgcggctcatatttgggtggatcat |
228 |
Q |
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| T |
39082350 |
tggtgcggctcatatttgggtggatcat |
39082377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 31726939 - 31727014
Alignment:
| Q |
153 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcat |
228 |
Q |
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| T |
31726939 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcat |
31727014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39075701 - 39075761
Alignment:
| Q |
1 |
tctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtatta |
61 |
Q |
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| T |
39075701 |
tctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
39075761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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