View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19902_high_2 (Length: 423)
Name: NF19902_high_2
Description: NF19902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19902_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 96 - 408
Target Start/End: Complemental strand, 45680845 - 45680535
Alignment:
| Q |
96 |
atacttatgtttgtttcttcatgataagttgataacaacctaaatgggttactacttgattcagttgaagaaactaagaaatggttgtgtttcattcagc |
195 |
Q |
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| T |
45680845 |
atacttttgtttgtttcttcatgataagttgataac---ctaaatgggttactacttgattcagttgaagaaactaagaaatggttgtgtttcattcagc |
45680749 |
T |
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| Q |
196 |
acca-gaagcctgggcaaatgatgttgttccttgtgctatacagtgctagcatttgcgctctctttgtggcgttccttgcttgcatgaagaaaagaatca |
294 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45680748 |
accaagaagcctgggcaaatgatgttgttccttgtgctatacagtgctagcatttgcgctctctttgtggcgttctttgcttgcatgaagaaaagaatca |
45680649 |
T |
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| Q |
295 |
acaaaaggtgcaatgtgggatccaactttccatgaagaatcggatcaagaatctcagagtattgaagagtctcgtcaaagaattatcataaagaaagatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
45680648 |
acaaaaggtgcaatgtgggatccaactttccatgaagaatcggatcaagaatctcagagtatttaagagtctcgtcaaagaattatcataaaaaaagatt |
45680549 |
T |
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| Q |
395 |
ctcaatggtttttc |
408 |
Q |
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|||||||||||||| |
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| T |
45680548 |
ctcaatggtttttc |
45680535 |
T |
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