View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19902_high_3 (Length: 385)
Name: NF19902_high_3
Description: NF19902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19902_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 16964634 - 16964816
Alignment:
| Q |
36 |
tgaaatattcactaattttactaatcactgatctctgttgaaaaatctattgatcggccatcagaagtggtttccccctctcaaccacatccatttacga |
135 |
Q |
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| T |
16964634 |
tgaaatattcactaattttgctaataactgatctctgttgaaaaatctattgatcgattatcagaagtggtttccccctctcaaccacatccattcacga |
16964733 |
T |
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| Q |
136 |
tgcccaatttcatgatttaattatgatatagtttgattgaatatatgtgtaaacaaaatttaaggaaataagatttaatctct |
218 |
Q |
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| T |
16964734 |
tgcccaattccatgatttaattacgatatagtttgattgaatatatgtgtaaacaaaatttaaggaaataagatttaatctct |
16964816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 370
Target Start/End: Original strand, 16964917 - 16965069
Alignment:
| Q |
214 |
tctctctctatagaaatttctcgctcaagaaaactatatttaaaatgtgttagatattaaatgtatgtatgtatctttccttagagattcgaatattggt |
313 |
Q |
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| T |
16964917 |
tctctctatatagaaatttctcgctcaagaaaactatatttaaaatgtgttagatattaaatgt----atgtatctttccttagagattcgaatattggt |
16965012 |
T |
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| Q |
314 |
tgtctatactgcgagctttaacccattccactagactcaacaaccattggtgagtat |
370 |
Q |
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| T |
16965013 |
tgtctatactacgagttttaaccccttccactagactcaacaaccattgatgagtat |
16965069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 34299405 - 34299446
Alignment:
| Q |
155 |
attatgatatagtttgattgaatatatgtgtaaacaaaattt |
196 |
Q |
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| T |
34299405 |
attatgatataatttgattgaatgtatgtgtaaaaaaaattt |
34299446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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