View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19902_low_1 (Length: 524)
Name: NF19902_low_1
Description: NF19902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19902_low_1 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 18059260 - 18058957
Alignment:
| Q |
18 |
ctttaattatctatacacaataacggttacttttgattaattatcttattttatttattactccatgtgatacatttcacattctaccacctgcacttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18059260 |
ctttaattatctatacacaataacggttacttttgattaattatcttattttatttattactcaatgtgatacatttcagattctaccacctgcacttgg |
18059161 |
T |
|
| Q |
118 |
aannnnnnnccaaaccataaaccatgagtatctacgaatatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagc |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059160 |
aatttttttccaaaccataaaccatgagtatctacgagtatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagc |
18059061 |
T |
|
| Q |
218 |
aatacaagaactgtgattattacacgtgattgaagatctttctgctttcacaatgacatttctcccaaaagtctaatggaatttaaatgcgactcaatta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
18059060 |
aatacaagaactgtgattattacacgtggttggagatctttctgctttcacaatgacatttctcccaaaagtctactccaatttaaatgcgactcaatta |
18058961 |
T |
|
| Q |
318 |
tggc |
321 |
Q |
| |
|
|||| |
|
|
| T |
18058960 |
tggc |
18058957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 143553 - 143250
Alignment:
| Q |
18 |
ctttaattatctatacacaataacggttacttttgattaattatcttattttatttattactccatgtgatacatttcacattctaccacctgcacttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
143553 |
ctttaattatctatacacaataacggttacttttgattaattatcttattttatttattactccatgtgatacatttcagattctaccacctgcatttgg |
143454 |
T |
|
| Q |
118 |
aannnnnnnccaaaccataaaccatgagtatctacgaatatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagc |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
143453 |
aatttttttccaaaccataaaccatgagtatctacgagtatgtggaggatcaaatactataactatttgtaaattagttttcaaaaaggatgtcaaaagc |
143354 |
T |
|
| Q |
218 |
aatacaagaactgtgattattacacgtgattgaagatctttctgctttcacaatgacatttctcccaaaagtctaatggaatttaaatgcgactcaatta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
143353 |
aatacaagaactgtgattattacacgtggttggagatctttctgctttcacaatgacatttctcccaaaagtctactccaatttaaatgcgactcaatta |
143254 |
T |
|
| Q |
318 |
tggc |
321 |
Q |
| |
|
|||| |
|
|
| T |
143253 |
tggc |
143250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 323 - 515
Target Start/End: Complemental strand, 143223 - 143031
Alignment:
| Q |
323 |
tttatagacgttattaactactactacaaactaaattattattgtaatattacttttaacatttactacgcatttcataatttattgttatagaaactat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143223 |
tttatagacgttattaactactactacaaactaaattattattgtaatattacttttaacatttactacgcatttcataatttattgttatagaaactat |
143124 |
T |
|
| Q |
423 |
atgccttagattttgtcctttttctacgacttccactgtgcctctataacatttctttaatattcaggttctccttacttattttagtattat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
143123 |
atgccttagattttgtcctttttctacgacttccactgtgcctctataacatttctttaatattcaggttctccttacttattttaatattat |
143031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 323 - 515
Target Start/End: Complemental strand, 18058930 - 18058738
Alignment:
| Q |
323 |
tttatagacgttattaactactactacaaactaaattattattgtaatattacttttaacatttactacgcatttcataatttattgttatagaaactat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18058930 |
tttatagacgttattaactactactacaaactaaattattattgtaatattacttttaacatttactacgcatttcataatttattgttatagaaactat |
18058831 |
T |
|
| Q |
423 |
atgccttagattttgtcctttttctacgacttccactgtgcctctataacatttctttaatattcaggttctccttacttattttagtattat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18058830 |
atgccttagattttgtcctttttctacgacttccactgtgcctctataacatttctttaatattcaggttctccttacttattttaatattat |
18058738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 11401232 - 11401419
Alignment:
| Q |
134 |
ataaaccatgagtatctacgaatatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagcaatacaagaactgtga |
233 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
11401232 |
ataaatcatgactatctccgagtctgtggaggatcaaatactataactatttgcaaattggaattcaaaaagaatgtcaataccaatacaagaaaagtga |
11401331 |
T |
|
| Q |
234 |
ttattacacgtgattgaagatctttctgctttcacaatgacatttctcccaaaagtctaatggaatttaaatgcgactcaattatggc |
321 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| | ||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
11401332 |
ttattacacgtggttggagatcattctgttatcacaatgacattcttcccaaaagtctattggaatttaagtgcgactcaataatggc |
11401419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 132 - 321
Target Start/End: Complemental strand, 118785 - 118596
Alignment:
| Q |
132 |
ccataaaccatgagtatctacgaatatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagcaatacaagaactgt |
231 |
Q |
| |
|
||||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||| | ||||||||||| || |
|
|
| T |
118785 |
ccataaatcatgaatatcttcgactctgtggaggatcaaatactataactatttgcaaattggaattcaagaagaatgtcaataccaatacaagaaaagt |
118686 |
T |
|
| Q |
232 |
gattattacacgtgattgaagatctttctgctttcacaatgacatttctcccaaaagtctaatggaatttaaatgcgactcaattatggc |
321 |
Q |
| |
|
|||||||||| ||| ||| ||||| ||||| | ||||||||||||| ||||||||||||| |||||||||| || || ||||| ||||| |
|
|
| T |
118685 |
gattattacaagtggttggagatcattctgttatcacaatgacattcttcccaaaagtctattggaatttaagtgtgattcaataatggc |
118596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 127 - 321
Target Start/End: Original strand, 17021244 - 17021438
Alignment:
| Q |
127 |
ccaaaccataaaccatgagtatctacgaatatgtggaggatcaaatactataactatttgcaaattagttttcaaaaaggatgtcaaaagcaatacaaga |
226 |
Q |
| |
|
|||| ||||||| ||||| ||||| || | ||||||| ||||||||||||||||||||||||||| | || |||||| ||||||| | |||||||||| |
|
|
| T |
17021244 |
ccaatccataaatcatgactatctttgagtctgtggagcatcaaatactataactatttgcaaatttgaattaaaaaagaatgtcaataccaatacaaga |
17021343 |
T |
|
| Q |
227 |
actgtgattattacacgtgattgaagatctttctgctttcacaatgacatttctcccaaaagtctaatggaatttaaatgcgactcaattatggc |
321 |
Q |
| |
|
| |||||||||| |||| ||||||||| || || | ||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
17021344 |
aaagtgattattatccgtggttgaagatcattttgttatcacaatgacattcttttcaaaagtctatcggaatttaagtgcgactcaataatggc |
17021438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University