View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19902_low_4 (Length: 373)
Name: NF19902_low_4
Description: NF19902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19902_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 4129304 - 4129645
Alignment:
| Q |
16 |
atgtacttgggaaggaaggttccataaaggataatcaaattcatatgcagagattactatttaccggtaaaggtaacatagttacaaaacaaagtcatat |
115 |
Q |
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| T |
4129304 |
atgtacttgggaaggaaggttccataaaggataatcaaattcacatgcagagattactatttaccggtaaaggtaacatagttacaaaacaaagtcatat |
4129403 |
T |
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| Q |
116 |
ttaagtgaaatttactactccctccgatccttgtgcaaagatgtattaggtttattagttattagattgagaacaatttcgcagccacaacaatcagggc |
215 |
Q |
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| T |
4129404 |
ttaagtgaaatttactactccctccgatccttgtgcaaagatgtattaggtttattagttattagattgagaacaatttcgcagccacaacaatcagggc |
4129503 |
T |
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| Q |
216 |
aatacaagaactcttcccaaattaataaataggaaacaaatttgtttattgacaaaactgagtaaactatgatcaaataatagttttttccttaacaatg |
315 |
Q |
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| T |
4129504 |
aatacaagaactcttcccaaattaataaataggaaacaaatttgtttattgacaaaactgagtaaactatgatcaaataatagttttttccttaacaatg |
4129603 |
T |
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| Q |
316 |
gtagtattcatctcaagcatattatttacctgccaatgacat |
357 |
Q |
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| T |
4129604 |
gtagtattcatctcaagcatattatttacctgccaatgacat |
4129645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 4119389 - 4119537
Alignment:
| Q |
154 |
agatgtattaggtttattagttattagattgagaacaatttcgcagccacaacaatcagggcaatacaagaact---cttcccaaattaataaataggaa |
250 |
Q |
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| T |
4119389 |
agatgtattatgtttattagttattaagttgattacaatttagcagccacaacaatcagggcaaaccaagaagttttcttcccaaattagtaaatagaaa |
4119488 |
T |
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| Q |
251 |
acaaatttgtttattgacaaaactgagtaaactatgatcaaataatagt |
299 |
Q |
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| T |
4119489 |
ataaatttgtttattgacaaaactaagtaaactatgatcaaataatagt |
4119537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 4141557 - 4141600
Alignment:
| Q |
261 |
ttattgacaaaactgagtaaactatgatcaaataatagtttttt |
304 |
Q |
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| T |
4141557 |
ttattgacaaaactgagtaaactatgatcaaataatagtttttt |
4141600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 4141412 - 4141515
Alignment:
| Q |
154 |
agatgtattaggtttattagttattagattgagaacaatttcgcagccacaacaatcagggcaatacaagaa---ctcttccc-aaattaataaatagga |
249 |
Q |
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| T |
4141412 |
agatgtattatgtttattatgcatcaaattgagaacatttcagcagc-acaacaatcaaggcagtacaagaagttctcttccccaaattaataaatagga |
4141510 |
T |
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| Q |
250 |
aacaa |
254 |
Q |
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||||| |
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| T |
4141511 |
aacaa |
4141515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 4141947 - 4141989
Alignment:
| Q |
307 |
ttaacaatggtagtattcatctcaagcatattatttacctgcc |
349 |
Q |
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| T |
4141947 |
ttaacaatggtagtattgatcccatgcatattatttacctgcc |
4141989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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