View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19903_high_1 (Length: 843)

Name: NF19903_high_1
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19903_high_1
NF19903_high_1
[»] chr3 (1 HSPs)
chr3 (20-827)||(23801580-23802369)


Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 20 - 827
Target Start/End: Original strand, 23801580 - 23802369
Alignment:
Q  20 atacgaacaaaaatggaccaactaaaaccaaaggttcttaattagttggaatatattcccttcaaatcatccctttgctccaaactttattaggaaaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23801580 atacgaacaaaaatggaccaactaaaaccaaaggttcttaattagttggaatatattcccttcaaatcatccctttgctccaaactttattgggaaaatt 23801679  T
Q  120 cagtcggaagaagaaaattcatcttgtgtgtttcatagattctccgacataaatcaatcacggttaaacggcggtaaaaacttcgtatcaataacaacac 219  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  23801680 cagtgggaagaagaaaactcatcttatgtgtttcatagattctcccacatagatcaatcacggttaaatggcggtaaaaacttcgtatcaataacaacac 23801779  T
Q  220 tnnnnnnnnncttacaatgttcaatcaatcataaccttgagatcaattaaaatgctttcctttattcgtaaggcatataatctgttgacactataaatac 319  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23801780 t-aaaaaaaacttacaatgttcaatcaatcataaccttgagatcaattaaaatgctttcctttattcgtaaagcatataatctgttgacactataaatac 23801878  T
Q  320 ggtctatagaaattaaccnnnnnnnngttattg--acaccattaaaacgaggagtgaatattatctcaaatactagttttctaaagcctagaaaataaat 417  Q
    ||||||||||||||||||        |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23801879 ggtctatagaaattaaccttttttttgttattgacacaccattaaaacgaggagtgaatattatctcaaatactagttttctaaagcctagaaaataaat 23801978  T
Q  418 cataatagatgttaacttttccttgattaactttttatgtgcacccttgctttgttgaaataaacaaattctcctttatgcaagtggaacaaactcggta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23801979 cataatagatgttaacttttccttgattaactttttatgtgcacccttgctttgttgaaataaacaaattctcctttatgcaagtggaacaaactcggta 23802078  T
Q  518 tatgtnnnnnnnncaaacacacatatgaattggttagtccaaaattagggtggtaagccacgtgtgttaggtagcacaggttgctttgnnnnnnnaagaa 617  Q
    |||||        |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  23802079 tatgt-aaaaaaacaaacacacatatgaattggttagtccataattagggtggtaagccacgtgtgttaggtagcacaggttgctttgtttttttaagaa 23802177  T
Q  618 gaagaaaacattaatataagttttattatacacaaagcgaacgaaaatttgattcaatttcgtaatatataaattgattcatacattgtaagagtgtaaa 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  23802178 gaagaaaacattaatataagttttattatacacaaagcgaacgaaaatttgattcaa-ttggtaatatataaattgattcatacattgtaagagtgtaaa 23802276  T
Q  718 tttaacttcctctatcaacggtagaatttcatcgttgaaaaatttataagtacattgcaagcattctttgaatctcaatatctaccctaatgagtttcca 817  Q
    |||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23802277 tttaacttcctctatca-----------------ttgaaaaatttataagtacattgcaagcattctttgaatctcaatatctaccctaatgagtttcca 23802359  T

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