View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_high_14 (Length: 219)
Name: NF19903_high_14
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 36472023 - 36472225
Alignment:
| Q |
1 |
ttgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatatatacgaacatagtaacataaatctctttagtagtt |
100 |
Q |
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| T |
36472023 |
ttgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatatatacgaacatagtaacataaatctctttattagtt |
36472122 |
T |
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| Q |
101 |
aaaaaatacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattccaagtccaatgaaaagtggccctaagataa |
200 |
Q |
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| T |
36472123 |
caaaaatacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattccaagtccaatgaaaagtggccctaagataa |
36472222 |
T |
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| Q |
201 |
atc |
203 |
Q |
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||| |
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| T |
36472223 |
atc |
36472225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 36463026 - 36463075
Alignment:
| Q |
154 |
tacctgaggagggattccaagtccaatgaaaagtggccctaagataaatc |
203 |
Q |
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| T |
36463026 |
tacctgaggagggattccaagtccaaggaagagtggcgctaagataaatc |
36463075 |
T |
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