View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_high_7 (Length: 440)
Name: NF19903_high_7
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 8162882 - 8163232
Alignment:
| Q |
5 |
gagtgagatgaagattatgaaagaaattgggttggactcatacagattctccatctcatggtcaagaatattcccaagtaagataaaaatattctctagt |
104 |
Q |
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| T |
8162882 |
gagtgacataaagattatgaaagaaattgggttggactcatacagattctccatctcatggtcaagaatattcccaagtaagataaaaatattctctagt |
8162981 |
T |
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| Q |
105 |
aatactaatttaactttaattttccttacaacttaaatattagtacattattaataaggtcattctcctttgataatcggaggttaacacaaaaagaaat |
204 |
Q |
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| T |
8162982 |
aatactaatttaactttaattttccttacaacttaaatattagtgcattattaataaggtcattctccactgataatcggaggttaacacaaaaagaaat |
8163081 |
T |
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| Q |
205 |
attacatgatatttttatggaaaaatatttgcacgatttttacgaaaatagatgaaaacgtctctaattcttttaaagttttaccactatatgatggatt |
304 |
Q |
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| T |
8163082 |
attacatgatagttttatagaaaaata-ttgcatgatttttacggaaatagatgaaaacgtctttaattcttttaaagttttaccactatatgatggatt |
8163180 |
T |
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| Q |
305 |
aagagacggatttcatttattttattttattatataaaaaatttcttgtcaa |
356 |
Q |
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| T |
8163181 |
aagagacggatttcatttattttattttattatataaaaaatttcttgtcaa |
8163232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 8138902 - 8138971
Alignment:
| Q |
22 |
tgaaagaaattgggttggactcatacagattctccatctcatggtcaagaatattcccaagtaagataaa |
91 |
Q |
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| T |
8138902 |
tgaaagaaattgggttggactcatacagattctccatctcatggtcaagaatattcccaagtaagataaa |
8138971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 25018298 - 25018256
Alignment:
| Q |
43 |
catacagattctccatctcatggtcaagaatattcccaagtaa |
85 |
Q |
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| T |
25018298 |
catacagattctccatctcttggccaagaatattgccaagtaa |
25018256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 25039409 - 25039367
Alignment:
| Q |
43 |
catacagattctccatctcatggtcaagaatattcccaagtaa |
85 |
Q |
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| T |
25039409 |
catacagattctccatctcttggccaagaatattgccaagtaa |
25039367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 25160772 - 25160728
Alignment:
| Q |
42 |
tcatacagattctccatctcatggtcaagaatattcccaagtaag |
86 |
Q |
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| T |
25160772 |
tcatacagattctccatatcctggtctagaatattgccaagtaag |
25160728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 29405671 - 29405711
Alignment:
| Q |
45 |
tacagattctccatctcatggtcaagaatattcccaagtaa |
85 |
Q |
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| T |
29405671 |
tacagattctcaatctcttggtcaagaatattgccaagtaa |
29405711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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