View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_high_8 (Length: 365)
Name: NF19903_high_8
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 36462888 - 36462540
Alignment:
| Q |
1 |
attttctgcatctatgtctgtggtagaatattaccttctgaaacgttttcccattccatatggtaagtgtatggataaatttaatatttgaannnnnnnn |
100 |
Q |
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| T |
36462888 |
attttctgcatctatgtctgtggtggaatattaccttctgaaacgttttcccattccatatggtaagtgtatggataaatttaatatttgaatttttttt |
36462789 |
T |
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| Q |
101 |
ctctagaacacttaatatcaaattatacaatggtgtgattcaactaaaagggtaggaaaaagggattgctacactaaaagaaggcaataattggttgatt |
200 |
Q |
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| T |
36462788 |
ctctagaacacttaatatcaaattatacaatggtgtgattcaactaaaagggtaggaaaaagggattgctacactaaaagaaggcaataattggttgatt |
36462689 |
T |
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| Q |
201 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagctgtagccactattgctgcacttgttgggcaacatttggtgagaaagcttatt |
300 |
Q |
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| T |
36462688 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
36462589 |
T |
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| Q |
301 |
gtcttattagggagagcatcaattatcattttcatcttagccctcacag |
349 |
Q |
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| T |
36462588 |
gtcttattagggagagcatcaattatcattttcatcttagccctcacag |
36462540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 201 - 349
Target Start/End: Complemental strand, 36471915 - 36471767
Alignment:
| Q |
201 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagctgtagccactattgctgcacttgttgggcaacatttggtgagaaagcttatt |
300 |
Q |
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| T |
36471915 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
36471816 |
T |
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| Q |
301 |
gtcttattagggagagcatcaattatcattttcatcttagccctcacag |
349 |
Q |
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| T |
36471815 |
gccttattaggaagagcatcaattatcattttcatcctagccctcacag |
36471767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36472018 - 36471937
Alignment:
| Q |
1 |
attttctgcatctatgtctgtggtagaatattaccttctgaaacgttttcccattccatatggtaagtgtatggataaattt |
82 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
36472018 |
attttctgcatctatgtctgtggtggaatattaccttctgaaacgttttccaattccatatggtaagtgcatggataaattt |
36471937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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